prot_H-elongata_contig127706.2042.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig127706.2042.1
Unique Nameprot_H-elongata_contig127706.2042.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
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BLAST of mRNA_H-elongata_contig127706.2042.1 vs. uniprot
Match: D8LMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ8_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.640e-41
Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = 0 
Query:    1 MTLVGLLVGLVLSVAKGAFGDLLRAMGLATILAVRRSRRLSAEYPLLPYARRALLMSSRRPFPPADNPWRYKRADALAEMEEEDRVLDDRNLPPEFSMAK 100
            M+LVGLLVGLVLSVA+GAFGDL RA+GLA++LAV RSRRLSAEYP LPYARRAL+M  RRPFPPA+NPW+YKRADA+AE+E+    LD  NLP EFSMAK
Sbjct:   13 MSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAK 112
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BLAST of mRNA_H-elongata_contig127706.2042.1 vs. uniprot
Match: A0A6H5K822_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K822_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 3.220e-39
Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = 0 
Query:    1 MTLVGLLVGLVLSVAKGAFGDLLRAMGLATILAVRRSRRLSAEYPLLPYARRALLMSSRRPFPPADNPWRYKRADALAEMEEEDRVLDDRNLPPEFSMAK 100
            M+LVGLLVGLVLSVA+GAFGDL RA+GLA++LAV RSRRLSAEYP LPYARRAL+M  RRPFPPA+NPW+YKRADA+AE+E+    LD  NLP EFSMAK
Sbjct:  231 MSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAK 330
[Close]
BLAST of mRNA_H-elongata_contig127706.2042.1 vs. uniprot
Match: A0A835Z6C8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.280e-12
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0 
Query:    1 MTLVGLLVGLVLSVAKGAFGDLLRAMGLATILAVRRSRRLSAEYPLLPYARRALLMSSRRPFPP 64
            M L GL +GL+LS+A+GAFGDLLRA+GL   L V RS  + ++YP+LP  + A+ M  RRPFPP
Sbjct:  177 MALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPP 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127706.2042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMQ8_ECTSI1.640e-4177.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K822_9PHAE3.220e-3977.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6C8_9STRA9.280e-1256.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..100
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.686

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127706contigH-elongata_contig127706:1408..1707 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127706.2042.1mRNA_H-elongata_contig127706.2042.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig127706 1381..1707 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig127706.2042.1 ID=prot_H-elongata_contig127706.2042.1|Name=mRNA_H-elongata_contig127706.2042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MTLVGLLVGLVLSVAKGAFGDLLRAMGLATILAVRRSRRLSAEYPLLPYA
RRALLMSSRRPFPPADNPWRYKRADALAEMEEEDRVLDDRNLPPEFSMAK
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