prot_H-elongata_contig12633.1962.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12633.1962.1
Unique Nameprot_H-elongata_contig12633.1962.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length176
Homology
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BLAST of mRNA_H-elongata_contig12633.1962.1 vs. uniprot
Match: A0A6H5JZI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.490e-6
Identity = 59/168 (35.12%), Postives = 70/168 (41.67%), Query Frame = 0 
Query:    3 FDSPRRSS--SSFKFGTP--TRASGAAATAVAAVAGWSASASASRPHS------------------RRGTPIRQGSFGGGEMARQDSATGSDSVFFGTGEGIAGGTPGAAKPASAKTAAGSASAVVVTSARTPSRNISRNTSYDNLLRTPIVGQGLAGPGISSPASRG 148
            FDSP RSS  S+  F TP  TR S +AATA++ VA WSASASA RP S                  R+  P+R  S                         +                            +TPSR +SRNTSY NLLR+P+VG GL GP   SP  RG
Sbjct:  299 FDSPHRSSAVSALPFTTPRRTRESKSAATAISCVAAWSASASA-RPASMGXXXXXXXXXXXXXXXXRQAPPLRLRSXXXXXXXXXXXXXXXXXXXXXXXXXL----------------------------KTPSRTLSRNTSYGNLLRSPLVGHGLRGPAAMSPRPRG 437
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12633.1962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZI2_9PHAE9.490e-635.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12633contigH-elongata_contig12633:4757..5284 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12633.1962.1mRNA_H-elongata_contig12633.1962.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12633 4757..5285 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12633.1962.1 ID=prot_H-elongata_contig12633.1962.1|Name=mRNA_H-elongata_contig12633.1962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
SSFDSPRRSSSSFKFGTPTRASGAAATAVAAVAGWSASASASRPHSRRGT
PIRQGSFGGGEMARQDSATGSDSVFFGTGEGIAGGTPGAAKPASAKTAAG
SASAVVVTSARTPSRNISRNTSYDNLLRTPIVGQGLAGPGISSPASRGHG
GSGRLAFSEDSRKNLLAGVGGSGSEP
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