prot_H-elongata_contig125994.1936.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig125994.1936.1
Unique Nameprot_H-elongata_contig125994.1936.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length47
Homology
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BLAST of mRNA_H-elongata_contig125994.1936.1 vs. uniprot
Match: D8LER5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.650e-13
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0 
Query:    3 YWSTFRDFLRGCIPRSELEEELIASLGAENVHLHNELVLCLINNA 47
            YWS  RDF+ G +PR  L+E L ASLGA+N+HLHNEL+LCL+NNA
Sbjct:   56 YWSALRDFMHGWLPRGGLDEALDASLGADNLHLHNELILCLLNNA 100
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BLAST of mRNA_H-elongata_contig125994.1936.1 vs. uniprot
Match: A0A6H5KRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.880e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0 
Query:    3 YWSTFRDFLRGCIPRSELEEELIASLGAENVHLHNELVLCLINNA 47
            YWS  RDF+ G + R  L+E L ASLGA+N+HLHNEL+LCL+NNA
Sbjct:   99 YWSALRDFMHGWLSRGGLDEALDASLGADNLHLHNELILCLLNNA 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125994.1936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LER5_ECTSI5.650e-1366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRA3_9PHAE6.880e-1264.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024738Transcriptional coactivator Hfi1/Transcriptional adapter 1PFAMPF12767SAGA-Tad1coord: 3..47
e-value: 7.5E-12
score: 45.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125994contigH-elongata_contig125994:1223..1363 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125994.1936.1mRNA_H-elongata_contig125994.1936.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig125994 1223..1363 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig125994.1936.1 ID=prot_H-elongata_contig125994.1936.1|Name=mRNA_H-elongata_contig125994.1936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
AGYWSTFRDFLRGCIPRSELEEELIASLGAENVHLHNELVLCLINNA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024738Hfi1/Tada1