prot_H-elongata_contig125712.1919.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig125712.1919.1
Unique Nameprot_H-elongata_contig125712.1919.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.000e-41
Identity = 67/72 (93.06%), Postives = 71/72 (98.61%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLGEG 72
            MVRLKMSETLTEA T+IEQGHVRVGPHAVTDPA+LVTR+MEDFVTWVDGSKIKRAIKTYEDK+DDFDLLGEG
Sbjct:  113 MVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.620e-33
Identity = 58/72 (80.56%), Postives = 61/72 (84.72%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLGEG 72
            MVR KMSETL EA TFIE GH+RVGP+ VTDPA+LVTR MEDFVTWVD SKIKR I  Y DKLDDFDLLGEG
Sbjct:  113 MVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A836BYG4_9CHLO (S4 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYG4_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 4.480e-33
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLL 69
            MVRLKM+ETL EAATFIEQGHVRVGP  VTDPAY VTRNMEDFVTWVD SK+KR +  Y DKLDDFDLL
Sbjct:   29 MVRLKMAETLREAATFIEQGHVRVGPTTVTDPAYHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDFDLL 97          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A061RGH8_9CHLO (U3 small nucleolar ribonucleoprotein IMP3 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RGH8_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 2.560e-32
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLL 69
            M RLKMSETL EAATFIEQGHVRVGP  VTDPA+LVTRNMEDFVTWVD SKIKR +  Y DKLDD+DLL
Sbjct:  113 MTRLKMSETLKEAATFIEQGHVRVGPDTVTDPAFLVTRNMEDFVTWVDTSKIKRKVMKYNDKLDDYDLL 181          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: K3XB78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XB78_GLOUD)

HSP 1 Score: 118 bits (296), Expect = 3.630e-32
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 70
            MVR+KM+E + EAATF+EQGHVRVGP  VTDPAYLVTR+MEDFVTWVD SKIKR I  Y DKLDD+DLLG
Sbjct:  113 MVRVKMAENIKEAATFVEQGHVRVGPSVVTDPAYLVTRSMEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 182          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A7S1X290_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X290_9CHLO)

HSP 1 Score: 117 bits (294), Expect = 7.100e-32
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLL 69
            MVRLKMSETL EA TFIEQGHVRVGP+ VTDPA+LVTRN EDFVTWVD SKIKR +  Y DKLDD+DLL
Sbjct:  113 MVRLKMSETLKEAVTFIEQGHVRVGPNTVTDPAFLVTRNFEDFVTWVDTSKIKRKVMKYNDKLDDYDLL 181          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A3M6VSP1_9STRA (S4 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSP1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.860e-32
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 70
            MVR+KM+E+L EA TF+EQGHVRVGP  VTDPA+LVTR MEDFVTWVD SKIKR I  Y DKLDD+DLLG
Sbjct:   30 MVRVKMAESLKEATTFVEQGHVRVGPTVVTDPAFLVTRPMEDFVTWVDSSKIKRTIMKYNDKLDDYDLLG 99          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: D8UBE0_VOLCA (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=D8UBE0_VOLCA)

HSP 1 Score: 117 bits (292), Expect = 1.430e-31
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLL 69
            MVRLKMSETL EAATFIEQGHVRVGP  VTDPA+ VTRNMEDFVTWVD SK+KR +  Y DKLDD+DLL
Sbjct:  113 MVRLKMSETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A7S3HSU8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSU8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.500e-31
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 70
            MVRLKMSE L EA TFIEQGHVRVGP+ +TDPA+LVTR  ED+VTWVD SKIKR I  Y DKLDDFDLLG
Sbjct:  114 MVRLKMSENLKEATTFIEQGHVRVGPNVITDPAFLVTRTFEDYVTWVDSSKIKRTIMKYNDKLDDFDLLG 183          
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 116 bits (291), Expect = 2.080e-31
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0
Query:    1 MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGSKIKRAIKTYEDKLDDFDLLG 70
            MVRLKMSET+ EA TFIE GHVRVGPH VTDPA+LV R MEDF+TWVD SKIKR I  Y DKLDD+DLLG
Sbjct:  113 MVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125712.1919.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ94_ECTSI3.000e-4193.06Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A836CN51_9STRA1.620e-3380.56Small nucleolar ribonucleoprotein U3 component n=1... [more]
A0A836BYG4_9CHLO4.480e-3382.61S4 domain-containing protein n=1 Tax=Edaphochlamys... [more]
A0A061RGH8_9CHLO2.560e-3282.61U3 small nucleolar ribonucleoprotein IMP3 n=1 Tax=... [more]
K3XB78_GLOUD3.630e-3278.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1X290_9CHLO7.100e-3281.16Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A3M6VSP1_9STRA7.860e-3277.14S4 domain-containing protein n=1 Tax=Peronospora e... [more]
D8UBE0_VOLCA1.430e-3181.16Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A0A7S3HSU8_9STRA1.500e-3178.57Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6S9JYI8_HETAK2.080e-3178.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 1..41
e-value: 1.1E-9
score: 37.8
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 1..67
e-value: 2.1E-6
score: 29.8
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..68
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 1..62
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125712contigH-elongata_contig125712:190..653 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125712.1919.1mRNA_H-elongata_contig125712.1919.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig125712 169..653 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig125712.1919.1 ID=prot_H-elongata_contig125712.1919.1|Name=mRNA_H-elongata_contig125712.1919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MVRLKMSETLTEAATFIEQGHVRVGPHAVTDPAYLVTRNMEDFVTWVDGS
KIKRAIKTYEDKLDDFDLLGEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf
IPR022801Ribosomal_S4/S9