prot_H-elongata_contig125688.1916.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig125688.1916.1
Unique Nameprot_H-elongata_contig125688.1916.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length44
Homology
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 8.530e-15
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            ++VNFI+GRNGSGKSAILAALQICLGA AH THRA+K++DFIR
Sbjct:  106 KHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIR 148          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-14
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            + VNFI+GRNGSGKSAILAALQICLGA AH THRA+K++DFIR
Sbjct:  199 KQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIR 241          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.740e-13
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            RN+NFI+G NGSGKSAILAALQICLGA A  THRA KL D IR
Sbjct:   97 RNINFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIR 139          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: F0YEV5_AURAN (SMC_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV5_AURAN)

HSP 1 Score: 66.2 bits (160), Expect = 6.770e-13
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            R +NFI+G NGSGKSAILAALQICLGA+A STHR  ++ D +R
Sbjct:   34 RRINFINGANGSGKSAILAALQICLGASAKSTHRGNRMGDLVR 76          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A1Z5JCK2_FISSO (AAA_23 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCK2_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 9.210e-13
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            RNVNFI+G+NGSGKSAILAALQICLGA A +THRA  L D IR
Sbjct:  107 RNVNFITGQNGSGKSAILAALQICLGAGARNTHRAGNLKDLIR 149          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: B8BRT7_THAPS (Smc-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRT7_THAPS)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            RNVNFI G+NGSGKSAILAA+Q+CLGA A  THRAR L D +R
Sbjct:  122 RNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVR 164          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A448ZJ22_9STRA (SMC_N domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ22_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            RNVNFI G+NGSGKSAILAA+QICLGA A  THRAR L D +R
Sbjct:  138 RNVNFIYGQNGSGKSAILAAIQICLGAGARRTHRARNLKDLVR 180          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A7S1FSU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSU6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            RNVNFI G+NGSGKSA+LAA+QICLGA A  THRAR L D IR
Sbjct:  122 RNVNFIHGQNGSGKSAVLAAVQICLGAGARRTHRARNLKDLIR 164          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A7S2KU12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KU12_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            RNVNFI G+NGSGKSAILAA+Q+CLGA A  THRAR L D +R
Sbjct:  136 RNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVR 178          
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A8J9SZH1_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SZH1_PHATR)

HSP 1 Score: 67.0 bits (162), Expect = 1.920e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 43
            RNVNFI G+NGSGKSAILAA+QICLGA+A  THRAR L   +R
Sbjct:   86 RNVNFIHGQNGSGKSAILAAIQICLGASASRTHRARNLKGLVR 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M1_ECTSI8.530e-1581.40Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI1.160e-1481.40Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A836CML4_9STRA6.740e-1379.07P-loop containing nucleoside triphosphate hydrolas... [more]
F0YEV5_AURAN6.770e-1369.77SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A1Z5JCK2_FISSO9.210e-1379.07AAA_23 domain-containing protein n=2 Tax=Fistulife... [more]
B8BRT7_THAPS1.260e-1274.42Smc-like protein n=1 Tax=Thalassiosira pseudonana ... [more]
A0A448ZJ22_9STRA1.260e-1276.74SMC_N domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A7S1FSU6_9STRA1.260e-1276.74Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2KU12_9STRA1.260e-1274.42Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A8J9SZH1_PHATR1.920e-1274.42Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..43
e-value: 5.3E-12
score: 48.3
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 2..43
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..43
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
IPR038729Rad50/SbcC-type AAA domainPFAMPF13476AAA_23coord: 2..34
e-value: 9.1E-8
score: 32.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125688contigH-elongata_contig125688:1537..1668 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125688.1916.1mRNA_H-elongata_contig125688.1916.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig125688 1537..1668 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig125688.1916.1 ID=prot_H-elongata_contig125688.1916.1|Name=mRNA_H-elongata_contig125688.1916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038729Rad50/SbcC_AAA
IPR027417P-loop_NTPase