prot_H-elongata_contig12524.1897.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12524.1897.1
Unique Nameprot_H-elongata_contig12524.1897.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1145
Homology
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BLAST of mRNA_H-elongata_contig12524.1897.1 vs. uniprot
Match: A0A6H5LAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.270e-7
Identity = 47/99 (47.47%), Postives = 57/99 (57.58%), Query Frame = 0 
Query:  670 GGPSESE-PSTTLEEDLALVREQQADYEGLLAIHGRIVREIVALQAEEDELRAFGNLPSAH----LKRTSPLPSPMLP---LAPALRKSDLKVQKRAAP 760
            G   E+E P+TT +EDLALVRE   + EGLLA+  R+ RE+V LQ EEDELR    LP A     L    PLP P+ P   +APA +K     Q R  P
Sbjct:  861 GSKDETEGPTTTRDEDLALVREMHQEREGLLAVRTRLRREVVTLQDEEDELRLVLGLPPARSELVLATPPPLPPPVEPSAAVAPAEKKRRPNPQWRTTP 959
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BLAST of mRNA_H-elongata_contig12524.1897.1 vs. uniprot
Match: D7FVQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ0_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.710e-5
Identity = 49/118 (41.53%), Postives = 61/118 (51.69%), Query Frame = 0 
Query:  632 VVSKKRPRRQSVALTSVP---ASDTIGNVAGHDRCR---RTEVTGGPSESE--------PSTTLEEDLALVREQQADYEGLLAIHGRIVREIVALQAEEDELRAFGNLPSAHLKRTSP 735
            V  KKR    S AL S     A +     AG++R R   R+   GG   S+        P+TT +EDLALVRE   + EGLLA+  R+ RE+V LQ EEDELR    LP A  +   P
Sbjct:  501 VGKKKRAAVSSGALRSQSRRKARELADPPAGNERHRGIPRSTRGGGGGTSDGNKDETEGPTTTRDEDLALVREMHQESEGLLAVRKRLRREVVTLQDEEDELRLVLGLPPARSELVLP 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12524.1897.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAT0_9PHAE9.270e-747.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVQ0_ECTSI1.710e-541.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12524contigH-elongata_contig12524:3400..7623 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12524.1897.1mRNA_H-elongata_contig12524.1897.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12524 3088..7692 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12524.1897.1 ID=prot_H-elongata_contig12524.1897.1|Name=mRNA_H-elongata_contig12524.1897.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1145bp
MPMLVKLGSRSRSPSMSEDRDMFVSERAMHISSTSNEKGEEDDMCGDLFQ
YRAPPPPSPSTESSDEDESEEDESKSTSQKSSESPSAPPSHRGVDTSHAW
DSRMEDAEFNGSSLVQPSADDPQGAETVATEPSPMTANARVVSPLALAAV
TTSPPVPAPSPSPTPAKNSSQPQQSTAAILQPRLSPLSRIRSRSSTSGAS
TSESAAPLPPPSPTQGCQISSQSRKRGQNPNTPPASKSNTQLSSRSLQRP
RKQGALSSSSNRDHSGGPGDPSPETSAEAAEVEQPSRMLGVAQVKAKRAC
SYLAIRSVQANKAPAGDGSTRGAKAAAAFDGEATRTASRKQRYNKDSEGD
SLDTIAVSALSAFRGSSLPHSPSSSSKSTADGEIDPSGRKAHKSLAERKG
NGDGEANMISPEISACPPPLPTRKTASKSKGRTVTISTHGTPEASTAALR
PPLPAPRSRVRNAATGAALSSSSSTLSGAATIGVASVHRTQAQPGDPTAG
GRNNRAGNAVTHKEIANILSVLAQGRSTSKGAGGLDKVPTNGVIPMSETS
PLTVPHRVTSKRGSSVTDGATSQGEDSNEDFDGVSQRQGQHSDLTRARAH
QNAGNEASPVLAKRRRGSPAQGTGAADRGANVVSKKRPRRQSVALTSVPA
SDTIGNVAGHDRCRRTEVTGGPSESEPSTTLEEDLALVREQQADYEGLLA
IHGRIVREIVALQAEEDELRAFGNLPSAHLKRTSPLPSPMLPLAPALRKS
DLKVQKRAAPAKPDAPVVNPASTSTEGAWSSPGNDTEPESNAVVGFSIPV
PASQCLTNNATGSDSPSVRGSLSESSREGAPYSSNNLEIFQAKETIPGCS
TTDDADEVARSKGETCEALQAAGSLPASSENNDGLPENSSDDVRGSPLSP
LVDVSVPTPSSGSSNDVVGSPLPPLVDVSAPTPSLRSSNGMPGSSLPPVV
NVSIPTPSLGSSNDVLVSPLPPLSGAPVGTLGDSHLSSGDGANFDMEELL
FGESDNDDDDDDDDDAGGAQAMGGKAGLAFAALHSDEVSASVEAPAQGPS
AGAVGVQGRRGRMAYTAVGSRGRGRCGRDSGVRPAPARTGPNRPRYVDLN
ATYKRHNSGGGRGRRGGRIESRGSSSMIASKRGRGSGRSAGRST*
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