prot_H-elongata_contig124641.1856.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig124641.1856.1
Unique Nameprot_H-elongata_contig124641.1856.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A085N151_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N151_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 9.090e-7
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    4 IDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLKIVVIRTDSGGE 51
            IDD++R+ +VR LKHKS   NA+++I+ ++ T  G K  V+RTD+G E
Sbjct:  512 IDDYSRYAVVRLLKHKSQVPNAIQEIVREWTTQVGYKPKVLRTDNGKE 559          
BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Match: A0A5S6Q5K7_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q5K7_TRIMR)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 22/48 (45.83%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    4 IDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLKIVVIRTDSGGE 51
            IDD +R+ +V+ LKHKS  T+A+++II ++ T  G +  V+RTD+G E
Sbjct:    2 IDDHSRYTVVKLLKHKSQVTSAIKEIITEWTTEFGQRPKVLRTDNGTE 49          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124641.1856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A085N151_9BILA9.090e-747.92Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A5S6Q5K7_TRIMR1.530e-545.83Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124641contigH-elongata_contig124641:300..455 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124641.1856.1mRNA_H-elongata_contig124641.1856.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig124641 240..659 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig124641.1856.1 ID=prot_H-elongata_contig124641.1856.1|Name=mRNA_H-elongata_contig124641.1856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MLCIDDFTRFKMVRFLKHKSDATNALRDIINDYFTPEGLKIVVIRTDSGG
E*
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