prot_H-elongata_contig124468.1835.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig124468.1835.1
Unique Nameprot_H-elongata_contig124468.1835.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length85
Homology
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: D7FZB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.660e-34
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0
Query:    3 QRVTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 85
            +RVTNPHEA+IG RVFLG+SGQPL DM RY T +   D D    KPACLRRLE+ L WRHMAPTAPETLGCYPF+TEDPF++E
Sbjct:  335 KRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKD---AKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVE 414          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7S2XVE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVE7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.190e-22
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 0
Query:    5 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 85
            VTNP+EA +GGR+FLG SGQP+ D+ R+  L +  DG   S++   L  +E+TL W H+APTAP+TL CYPF  EDPFI++
Sbjct:   49 VTNPYEAEVGGRLFLGHSGQPVLDISRFTHLGQ-DDGKSASQR--TLDIMEETLKWAHLAPTAPDTLACYPFFQEDPFILK 126          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A835YHI6_9STRA (DNA polymerase alpha/epsilon subunit B-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.190e-21
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 0
Query:    5 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 85
             TNPHEA +G R+ LGT+GQPL D+ +Y        GD + +    L+ LE  L W+H+APTAP+TLGCYPF+TEDPF++E
Sbjct:  395 ATNPHEAWVGTRLVLGTAGQPLDDILQYTAAAEGAGGD-EGDSARRLQMLENMLRWQHIAPTAPDTLGCYPFLTEDPFVLE 474          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7R9ITJ9_9NEOP (Hypothetical protein (Fragment) n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9ITJ9_9NEOP)

HSP 1 Score: 90.5 bits (223), Expect = 1.740e-21
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 0
Query:    5 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 84
            V+NP++  +GGR FLGTSGQPL D+ RY+ L          E P  L  LEQTL W H++PT+P+TLGCYP+  EDPFII
Sbjct:   44 VSNPYQCDVGGRRFLGTSGQPLDDIARYSKL----------EDP--LEILEQTLEWGHLSPTSPDTLGCYPYYKEDPFII 111          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7R9PML2_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9PML2_TIMGE)

HSP 1 Score: 90.5 bits (223), Expect = 2.710e-21
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 0
Query:    5 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 84
            V+NP++  +GGR FLGTSGQPL D+ RY+ L          E P  L  LEQTL W H++PT+P+TLGCYP+  EDPFII
Sbjct:   10 VSNPYQCDVGGRRFLGTSGQPLDDIARYSKL----------EDP--LEILEQTLEWGHLSPTSPDTLGCYPYYKEDPFII 77          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7J5YNE7_DISMA (DNA polymerase delta subunit 2 n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5YNE7_DISMA)

HSP 1 Score: 90.9 bits (224), Expect = 1.880e-19
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 0
Query:    3 QRVTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 85
            Q VTNPH++ I G  FLGTSGQ + D++RY+++D     DH       L  LE+TL  RH+APTAP+TLGCYPF  +DPFI+E
Sbjct:  654 QLVTNPHQSHIDGVRFLGTSGQNVCDIQRYSSMD-----DH-------LEILEETLRLRHLAPTAPDTLGCYPFYQKDPFILE 724          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7R9EV73_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9EV73_9NEOP)

HSP 1 Score: 90.5 bits (223), Expect = 2.570e-19
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 0
Query:    5 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 84
            V+NP++  +GGR FLGTSGQPL D+ RY+ L          E P  L  LEQTL W H++PT+P+TLGCYP+  EDPFII
Sbjct:  695 VSNPYQCDVGGRRFLGTSGQPLDDIARYSKL----------EDP--LEILEQTLEWGHLSPTSPDTLGCYPYYKEDPFII 762          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A6I9NCE6_9TELE (DNA polymerase delta subunit 2 n=4 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9NCE6_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 2.900e-19
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 0
Query:    3 QRVTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE 85
            Q VTNPH++ I G  FLGTSGQ + D++RY+++D     DH       L  LE TL  RH+APTAP+TLGCYPF  +DPFI+E
Sbjct:  327 QLVTNPHQSHIDGVRFLGTSGQNVCDIQRYSSMD-----DH-------LEILEDTLRLRHLAPTAPDTLGCYPFYQKDPFILE 397          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A1S3JJW3_LINUN (DNA polymerase delta subunit 2 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JJW3_LINUN)

HSP 1 Score: 89.4 bits (220), Expect = 5.470e-19
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 0
Query:    5 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 84
            VTNP++  I G  FLGTSGQ +TD+ RY+TLD     DH       L+ +E  LTW H+APTAP+TLGCYP+ + DPFII
Sbjct:  330 VTNPYDCTIEGIRFLGTSGQNVTDIHRYSTLD-----DH-------LQIMENCLTWGHLAPTAPDTLGCYPYYSNDPFII 397          
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Match: A0A7R9D1D7_TIMPO (Hypothetical protein n=4 Tax=Timema TaxID=61471 RepID=A0A7R9D1D7_TIMPO)

HSP 1 Score: 88.2 bits (217), Expect = 1.480e-18
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 0
Query:    5 VTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPACLRRLEQTLTWRHMAPTAPETLGCYPFITEDPFII 84
            V+NP+   +GGR FLGTSGQPL D+ RY+ L          E P  L  LEQTL W H++PT+P+TL CYP+  EDPFII
Sbjct:  349 VSNPYHCEVGGRRFLGTSGQPLDDIARYSKL----------EDP--LEILEQTLEWGHLSPTSPDTLSCYPYYKEDPFII 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124468.1835.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB3_ECTSI6.660e-3472.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XVE7_9STRA3.190e-2254.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YHI6_9STRA1.190e-2153.09DNA polymerase alpha/epsilon subunit B-domain-cont... [more]
A0A7R9ITJ9_9NEOP1.740e-2155.00Hypothetical protein (Fragment) n=1 Tax=Timema tah... [more]
A0A7R9PML2_TIMGE2.710e-2155.00Hypothetical protein n=1 Tax=Timema genevievae Tax... [more]
A0A7J5YNE7_DISMA1.880e-1954.22DNA polymerase delta subunit 2 n=1 Tax=Dissostichu... [more]
A0A7R9EV73_9NEOP2.570e-1955.00Hypothetical protein n=1 Tax=Timema bartmani TaxID... [more]
A0A6I9NCE6_9TELE2.900e-1954.22DNA polymerase delta subunit 2 n=4 Tax=Notothenioi... [more]
A0A1S3JJW3_LINUN5.470e-1955.00DNA polymerase delta subunit 2 n=2 Tax=Lingula ung... [more]
A0A7R9D1D7_TIMPO1.480e-1853.75Hypothetical protein n=4 Tax=Timema TaxID=61471 Re... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.60.21.50coord: 1..85
e-value: 1.2E-27
score: 98.9
IPR007185DNA polymerase alpha/delta/epsilon, subunit BPFAMPF04042DNA_pol_E_Bcoord: 4..84
e-value: 1.2E-10
score: 41.1
IPR024826DNA polymerase delta/II small subunit familyPANTHERPTHR10416DNA POLYMERASE DELTA SUBUNIT 2coord: 3..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124468contigH-elongata_contig124468:236..1324 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124468.1835.1mRNA_H-elongata_contig124468.1835.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig124468 236..1324 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig124468.1835.1 ID=prot_H-elongata_contig124468.1835.1|Name=mRNA_H-elongata_contig124468.1835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MQQRVTNPHEARIGGRVFLGTSGQPLTDMERYATLDRAPDGDHDSEKPAC
LRRLEQTLTWRHMAPTAPETLGCYPFITEDPFIIE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007185DNA_pol_a/d/e_bsu
IPR024826DNA_pol_delta/II_ssu