prot_H-elongata_contig12440.1828.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12440.1828.1
Unique Nameprot_H-elongata_contig12440.1828.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length286
Homology
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: D7FJM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM0_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 2.090e-75
Identity = 155/303 (51.16%), Postives = 191/303 (63.04%), Query Frame = 0
Query:    1 RGVLESLAEELAAFCQHLPDHERTVYLFQDNCKILTGERKGDQYTSPWCFRQLCRVAGAA-------------------DSVSSLASRLLSSLDGDDLALLAGYLVRTKRAVREERILKVTSAGSTGRRWTSANTASSGISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSALADAGTSF-KDPSERAELE 283
            R VLE LAE++  +CQHLP  ERTVYL           R   Q+ SPW F QLCR A +                    +  SS   R+L+ +  DD+AL A YLVRTKRAV E  +LKV S G   R   +A T    +SET+KD+LRLRCTV SL+ +A+DL  RI   ++DAL E R+G+KQAALVH+RRMKQ QAARDKRLSSLL LE ALDQ            VK L++DKQVLEAHEAAT+AL++CRE+ GLT+ERVE TLDA+AEEM + + + +AL   G    +D  E AELE
Sbjct:  147 RNVLEDLAEQVVGYCQHLPPDERTVYLLAAVHSETAASRPVAQHASPWNFEQLCRAAASEAAATTTATRVASGRAPPTPEKCSSAVPRMLARISSDDVALFAKYLVRTKRAVTEGGLLKVLSRGGGSRVAAAAAT----VSETEKDLLRLRCTVASLEASASDLGLRIQRVQQDALMENRRGQKQAALVHLRRMKQYQAARDKRLSSLLTLETALDQ------------VKQLRLDKQVLEAHEAATSALKACRETQGLTVERVENTLDALAEEMAEAEAVGTALGQDGALLGQDEGETAELE 433          
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: A0A6H5L709_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L709_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 8.840e-75
Identity = 155/308 (50.32%), Postives = 192/308 (62.34%), Query Frame = 0
Query:    1 RGVLESLAEELAAFCQHLPDHERTVYLFQDNCKILTGERKGDQYTSPWCFRQLCRVAGAA---------------------DSVSSLASRLLSSLDGDDLALLAGYLVRTKRAVREERILKVTSAGSTGRRWTSANTASSGISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSALADAGTSF-KDPSERAELEAEL 286
            R VLE LAE++  +CQHLP +E TVYL        +      Q+ SPW F QLCR A AA                     +  S  A R+L+ +  DD+AL A YLVRTKRAV E  +LKV   G   R       A + +SET+KD+LRLRCTV SL+ +A+DL  RI   ++DAL E R+G+K+AALVH+RRMKQ QAARDKRLSSLL LE ALDQ            VK L++DKQVLEAHEAATNAL++CRE+ GLT+ERVE TLDA+A EM + + + +AL   G    +D  E AELEAEL
Sbjct:  140 RNVLEDLAEQVVGYCQHLPPNESTVYLLAAGHSEASASCPVAQHASPWNFEQLCRTAAAAAEDAATATATRVASGRGPPTPEKCSVAAPRMLAHMSSDDVALFAKYLVRTKRAVTEGGLLKVLFRGGGNR----VAAAGATVSETEKDLLRLRCTVASLEASASDLGLRIQRVQQDALMENRRGQKRAALVHLRRMKQYQAARDKRLSSLLTLETALDQ------------VKQLRLDKQVLEAHEAATNALKACRETQGLTVERVEDTLDALAGEMAEAEAVGAALGQEGALLGQDEGETAELEAEL 431          
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: A0A7S2Y185_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y185_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.420e-8
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 0
Query:  120 GISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHW-QVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSALADAGTSFKDPSERAELEA 284
            G+ E D+  L L CT+   +     L  R++  R +A   +++G+K+AAL  +R  + +    +K LS  +A+ A LDQA         W  V      + +++AH+AAT ALRS +E  GL+++ V+  LD+M EE+ + Q+I+  LA       +P +  EL A
Sbjct:  323 GVEEADRARLMLACTIHKTRSEVNRLHGRVEKERSEAKDWLKKGQKEAALARLRVCRLV----EKGLSQQVAVLANLDQA---------WLAVGQALSTRDIVDAHKAATQALRSSKE--GLSLDDVDDILDSMQEEIDEHQEINERLASMVDLNSNPEDDEELAA 473          
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: A0A165KX28_EXIGL (Uncharacterized protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165KX28_EXIGL)

HSP 1 Score: 63.5 bits (153), Expect = 9.840e-8
Identity = 52/195 (26.67%), Postives = 95/195 (48.72%), Query Frame = 0
Query:   73 SLDGDDLALLAGYLVRTKRA-VREERILKVTSAGSTGRRWTSANTASSGISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSAL 266
            +L   D+ +L  YL R KR  V ++ ++K     ST           + I+E D+ +L ++  V  L+    D+R++I    +     +R  +K  A+ ++R  KQL+    KRL +L  L++ L              ++    D ++++A+E +   LR+  ++  L  ERV+ TLD MAE +  Q++I  A+
Sbjct:  215 TLSDTDIKVLIRYLSRDKRCIVADKEVVKFVEVDSTA----------TSITEVDRGVLEMQMAVERLETQVEDIRKQIAQRTERIATALRAAQKTLAMSYLRSRKQLEDLLSKRLGALDTLQSQLSA------------IERAVGDAEIMQAYETSARTLRTALQNPLLQRERVDATLDDMAEALADQREIDDAI 387          
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Match: UPI00044082B8 (Snf7-domain-containing protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI00044082B8)

HSP 1 Score: 58.9 bits (141), Expect = 3.370e-6
Identity = 47/166 (28.31%), Postives = 83/166 (50.00%), Query Frame = 0
Query:  121 ISETDKDILRLRCTVGSLKVNAADLRQRIDLHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAVYLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLDAMAEEMTKQQDISSALADAGTSFKDPSERAELEAEL 286
            IS  DK IL L+  V ++++    L +RI    +   + +    K+ A+ H++  KQ +    KRL SL  L+A L Q            V+    D ++++ +E++T  LR+      L  ER++ T+DAMAE   +Q+++  A+    +   +  +  EL+AEL
Sbjct:  259 ISSIDKGILELKTAVENMELQIEALNKRITEKIQKIKECLGANRKEVAMTHLKSRKQYEDLLRKRLGSLEVLQATLIQ------------VEAAAQDVEIMKQYESSTATLRAILSHPSLQRERIDATMDAMAEASAEQREVDEAIRTGMSGITEDVDEDELQAEL 412          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12440.1828.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJM0_ECTSI2.090e-7551.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L709_9PHAE8.840e-7550.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2Y185_9STRA2.420e-832.53Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A165KX28_EXIGL9.840e-826.67Uncharacterized protein n=1 Tax=Exidia glandulosa ... [more]
UPI00044082B83.370e-628.31Snf7-domain-containing protein n=1 Tax=Fomitiporia... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 279..286
NoneNo IPR availablePANTHERPTHR22761SNF7 - RELATEDcoord: 110..286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12440contigH-elongata_contig12440:6070..8482 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12440.1828.1mRNA_H-elongata_contig12440.1828.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12440 6070..8482 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12440.1828.1 ID=prot_H-elongata_contig12440.1828.1|Name=mRNA_H-elongata_contig12440.1828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
RGVLESLAEELAAFCQHLPDHERTVYLFQDNCKILTGERKGDQYTSPWCF
RQLCRVAGAADSVSSLASRLLSSLDGDDLALLAGYLVRTKRAVREERILK
VTSAGSTGRRWTSANTASSGISETDKDILRLRCTVGSLKVNAADLRQRID
LHRKDALQEMRQGEKQAALVHMRRMKQLQAARDKRLSSLLALEAALDQAV
YLLSAHNHWQVKHLQMDKQVLEAHEAATNALRSCRESHGLTIERVEYTLD
AMAEEMTKQQDISSALADAGTSFKDPSERAELEAEL
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