prot_H-elongata_contig12437.1826.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig12437.1826.1
Unique Name	prot_H-elongata_contig12437.1826.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	164

Homology

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BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.120e-39
Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = 0

Query:   34 MEPITPEALGGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            M PI+  ALGG++YV K+ DE TKW E  L+K+K DA+ + QLF QS+V+ + FR++ LR DK  E    E++ +CLQ G  LEYAS N PQQ+G +E  GRTL AMVRC+LTDSGL +FLW +LM TAA+
Sbjct:    1 MGPISLPALGGFRYVNKLVDEKTKWKETFLMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAY 131

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BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.420e-37
Identity = 72/164 (43.90%), Postives = 99/164 (60.37%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEALGGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC +GKS    HPK   +   + FQ + VD + P TP ALGG+KY  K  D+ TKW EI L+K +  ++ S  LF +  V+ +  R+  LR D   E+ S E++ +C   G+ LE+AS N PQQ+G +E  GRT+  +VRCLL DS L  FLW EL+ TA +
Sbjct:  321 CCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLPNFLWGELIQTAVY 484

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BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.100e-35
Identity = 73/164 (44.51%), Postives = 98/164 (59.76%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEALGGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC +GKS    HPK A +   + FQ    D + P  P ALGG KY  K  D+ TKW EI L+K +  ++ S  LF +  V+ +  R+  LR D+  E+ S E++ +C   G+ LE+AS NIPQQIG +E  GRT+  +VRCLL DS L  FLW EL+ TA +
Sbjct:   81 CSVCPLGKSAQQPHPKQATYGVLRPFQH---DTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVY 241

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BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.930e-35
Identity = 66/167 (39.52%), Postives = 98/167 (58.68%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC + K    +HPK + H+ ++  QL+ +D M P+ P A    G + Y  KI+D+HTK  E++LL+ K D+  +   +   V  A  +R E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:   77 CGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDSTEAVHTYNMCVAAARGYRTETIRCDKEGENTGSEFRDYCKNSALKLEYAATNTPQQIGVSERDGQTLAGVTRCLLEDGDFPPSMWGELMLTAAY 243

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BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.420e-33
Identity = 63/167 (37.72%), Postives = 96/167 (57.49%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  K++D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:  401 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 567

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BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.520e-33
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:   77 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 243

[Close]

BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.660e-33
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:   77 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 243

[Close]

BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.660e-33
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:  418 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 584

[Close]

BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.670e-33
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:   77 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 243

[Close]

BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.390e-33
Identity = 64/167 (38.32%), Postives = 95/167 (56.89%), Query Frame = 0

Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 164
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:  453 CGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 619

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot

BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L6R7_9PHAE	1.120e-39	55.73	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KXM1_9PHAE	1.420e-37	43.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KL37_9PHAE	1.100e-35	44.51	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JFQ6_9PHAE	3.930e-35	39.52	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVF6_9PHAE	1.420e-33	37.72	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K500_9PHAE	1.520e-33	38.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	1.660e-33	38.32	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5J8P7_9PHAE	1.660e-33	38.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCT3_9PHAE	1.670e-33	38.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KT84_9PHAE	2.390e-33	38.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 26..139 e-value: 5.0E-9 score: 36.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 11..164 score: 12.452
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 15..164 e-value: 3.0E-18 score: 67.7
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..160
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 1..160
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 22..163

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig12437	contig	H-elongata_contig12437:3257..3748 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig12437.1826.1	mRNA_H-elongata_contig12437.1826.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig12437 3257..3748 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig12437.1826.1 ID=prot_H-elongata_contig12437.1826.1|Name=mRNA_H-elongata_contig12437.1826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEALGGYKYVRK
ISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEY
ISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGL
TRFLWAELMFTAAF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf