prot_H-elongata_contig123888.1797.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig123888.1797.1
Unique Nameprot_H-elongata_contig123888.1797.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length305
Homology
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 2.230e-67
Identity = 146/343 (42.57%), Postives = 191/343 (55.69%), Query Frame = 0
Query:    4 LVGCGDSSFCQLPCMCPSSSWRRK--------RPEGSDVVNAL--KISQVSCGTSVAVALVSP--------AVASRQSYGVVEWGTSMYGEKTSSAAKAGHENSGTKPCGRQNGLPPPLRHPVEIA-SML------SGPGVRSISCGAHFVVASVQTGGCITWGGGRD-HRALGRGGCGSCTSPTCINTGEPSTPP-SPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAA---------AACYKNSRQAGDNVSSPVSVHAV-----ACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            LVG GDSSFCQ+PC  P +SW R+         P  ++ V  +  KISQ++CG +  +A V+         A+   +   ++EWGT +YGE+ S+      +       G +      L HP ++A S L      S P +R I+CGAHFVVAS++ GGCI+WGGGR+  RALGRG CG+C    C N   P+ PP S P      WVA+PLG GG +V  LAAGDDH +    DG+AWAWGRGDCGQLG  + P          +C PM VQ P+ A+         A+    +  A   V S   VH       ACGRDHSA++T DGR+WTFGSGL+GQ+
Sbjct:    8 LVGVGDSSFCQIPC--PWASWSRQTADANSKSHPSRNEDVRRVQTKISQIACGATTCLAAVNXXXXXXXXSAIDHARPSFLLEWGTGLYGERLSTETSVPQQ-------GDERNHASFLNHPAQVALSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAATGVKSGHGVHGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQL 339          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.060e-59
Identity = 145/359 (40.39%), Postives = 186/359 (51.81%), Query Frame = 0
Query:    4 LVGCGDSSFCQLPCMCPSSSWRRK------RPEGS----DVVNA-LKISQVSCGTSVAVALVSP-------------AVASRQSYGVVEWGTSMYGEKTSSAAKAGHENSGTKPCGRQNGLPPPLRHPVEIA-SML------SGPGVRSISCGAHFVVASVQTGGCITWGGGRD-HRALGRGGCGSCTSPTCINTGEPSTPP-SPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPT-------------------AAAAACYKNSRQAGDNVSSP-----VSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            LVG GDSSFCQ+PC  P +SW R+      +  GS    DV     KISQ++CG +  +A V+              A+       ++EWGT +YGE+ S+      +       G +      L HP  +A S L      S P +R I+CGAHFVVAS++ GGCI+WGGGR+  RALGRG CG+C    C +   P+  P S P   N  WVA+PLG GG +V  LAAGDDH +    DG AWAWGRGDCGQLG  + P          +C PM VQ P+                   A A        ++G  +  P       V   ACGRDHSA++T DGR+WTFGSGL+GQ+
Sbjct:    8 LVGVGDSSFCQIPC--PWASWSRQTADEKGKSHGSSSNDDVCRVQTKISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPPAYLLEWGTGLYGERLSTETSVPQQ-------GDERNQESFLNHPAPVAFSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CHDGSTPAARPLSYPSSSNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGS-PDGVDYDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQL 354          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: UPI0018AFE07C (cell wall anchor protein n=1 Tax=Hymenobacter jeongseonensis TaxID=2791027 RepID=UPI0018AFE07C)

HSP 1 Score: 69.7 bits (169), Expect = 1.110e-9
Identity = 57/199 (28.64%), Postives = 81/199 (40.70%), Query Frame = 0
Query:  107 PVEIASMLSGPGVRSISCGAHFVVASVQTGGCITWGGGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            PV++     G G   ++ G    +A    G    WGG RD + LG G   + T+P  +   E +          A W              +AAG  H++    DG  +AWG  D GQLG  +         S  S TP+ V  PT+AA   +                  +A G DH+  LT DGRL+ +G+  YGQ+
Sbjct:   68 PVQVRPPAPGTGWSQVAMGTSHTLALTTDGRIQAWGGNRDGQ-LGDGTASAHTTPVAVALPEAAA--------QAQWK------------QIAAGTSHSLALTTDGQLYAWGNNDEGQLGNGS---------SLDSPTPVAVSLPTSAANTTWAQ----------------IAAGNDHTLALTTDGRLFAWGNNQYGQL 220          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A8J9ZP77_BRALA (RCCD1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZP77_BRALA)

HSP 1 Score: 69.3 bits (168), Expect = 1.170e-9
Identity = 57/204 (27.94%), Postives = 88/204 (43.14%), Query Frame = 0
Query:  116 GPGVRSISCGAHFVVASVQTGGCITWGGGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPV--------------SVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            G  V+++ CG    +A   +G   +WG G     LG G   +C +P  I   E                       G+ ++++AAG  H+V   A G+ + WG  + GQLG   LP S+        CT    + P+ +  A      Q GDNV+  +               +  ++CG  H+A LTK+G+L T+G G YGQ+
Sbjct:  162 GENVKAVCCGKEHSLALTVSGRVFSWGNG-SRGQLGHGTTEACNTPQVIEALE-----------------------GVTMVTIAAGGWHSVSVSACGDLYVWGWNEAGQLG---LPTSKHKTGPSDGCTTCTDKEPSVSDMA------QQGDNVAEVLVQATPTIVDLPTGQELSKISCGSRHTAALTKEGQLLTWGWGAYGQL 332          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A3Q1EBR4_9TELE (Probable E3 ubiquitin-protein ligase HERC4 n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1EBR4_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 1.590e-9
Identity = 63/206 (30.58%), Postives = 87/206 (42.23%), Query Frame = 0
Query:  102 PPLRHPVEIASMLSGPGVRSISCGAHFVVASVQTGGCITWG-GGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGC-DTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            PP   P+E  S +    V  +SCG    V   + G   TWG   R    LG+   GS         G P              + Q L    + ++ + AG + + V    G  ++WGR DCGQLG  DT   S          TP  VQ        C    +          +VH V+CG+DH+A+LTK G ++TFGSG +GQ+
Sbjct:  110 PPTARPLEAFSNIQ---VSQVSCGIKHSVVLTRDGRVFTWGQNSRGQLGLGKKSSGS---------GSPQ-------------LVQTLSE--IPLVQVCAGGEQSFVLSVSGGLFSWGRNDCGQLGLGDTTDRS----------TPTSVQ--------CLNMKK----------TVH-VSCGKDHTAILTKHGSVFTFGSGRFGQL 259          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: UPI0009B4C859 (probable E3 ubiquitin-protein ligase HERC3 n=1 Tax=Monopterus albus TaxID=43700 RepID=UPI0009B4C859)

HSP 1 Score: 68.6 bits (166), Expect = 3.820e-9
Identity = 59/204 (28.92%), Postives = 87/204 (42.65%), Query Frame = 0
Query:  103 PLRHPVEIASMLSGPGVRSISCGAHFVVASVQTGGCITWG-GGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            P   P+E+   +    V  ++CG+   VA  + G   TWG   R    LG   C S +SP  +            +F +A           + ++ +AAG + +      G  + WGR DCGQLG         +        P  V F                  +S   ++H V+CG+DHSA+LTKDG ++TFGSG YGQ+
Sbjct:  108 PTPRPLEVFCKIP---VSQVACGSQHSVALTKNGQVYTWGLDSRGQLGLGNRRC-STSSPRHL------------QFLSA-----------IPLVQIAAGGEQSFALSVSGGVFGWGRNDCGQLG---------LGDETDRHIPTPVHF------------------LSMKKTIH-VSCGKDHSAILTKDGVVFTFGSGQYGQL 256          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A521Q7E9_9PROT (Fibronectin type-III domain-containing protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A521Q7E9_9PROT)

HSP 1 Score: 67.0 bits (162), Expect = 1.140e-8
Identity = 63/202 (31.19%), Postives = 86/202 (42.57%), Query Frame = 0
Query:  114 LSGPGVRSISCGAHFVVASVQTGGCITWGGGRDHRALGRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQ--PLGSGGL--EVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAA-ACYKNSRQAGDNVSSPV-----SVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            L+ P + +I+ G    VA    G    WG    +  LG  G  S     C N          P +G   W     P    G+   V ++A G  HT+   +DG  WAWGR D GQLG  TL A+      + S T M+     A A    +  + QA +   +PV     S+ AV+ G  HS  L  DG +W +G   YGQ+
Sbjct:  443 LAPPAMTAIAAGFQHTVALKDDGTVWAWG----YNVLGTLGYASMD---CAN----------PVYGQFFWTCSDVPTQLTGITGSVAAIAGGYSHTLAVTSDGQVWAWGRNDTGQLG--TLAAN-----CNRSITQMLPSILQAQALDTVFDPATQACNTTPTPVNAIPGSIVAVSAGMRHSLALMSDGTVWAWGGNYYGQL 620          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: UPI0011EA47F1 (probable E3 ubiquitin-protein ligase HERC4 isoform X1 n=3 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011EA47F1)

HSP 1 Score: 66.6 bits (161), Expect = 1.650e-8
Identity = 54/190 (28.42%), Postives = 77/190 (40.53%), Query Frame = 0
Query:  119 VRSISCGAHFVVASVQTGGCITWGGG-RDHRALG--RGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            V  I+CG+   VA  + G   TWG   R    LG  + GC S      ++T                          + VI +AAG D +      G  ++WGR DCGQLG   +             TP+ V         C    +            H ++CG+DH+A+LTK G ++TFGSG +GQ+
Sbjct:  126 VSQIACGSQHSVALTKGGQLYTWGQDCRGQLGLGTRKSGCRSPQHVRSLST--------------------------IPVIQVAAGGDQSFALSVSGGVFSWGRNDCGQLGLGDIKDRH---------TPVSVH--------CLNRKK-----------AHHISCGQDHTAILTKHGAVFTFGSGQHGQL 261          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A3P9J792_ORYLA (Uncharacterized protein n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9J792_ORYLA)

HSP 1 Score: 66.2 bits (160), Expect = 1.930e-8
Identity = 40/114 (35.09%), Postives = 57/114 (50.00%), Query Frame = 0
Query:  192 GLEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            G+ ++ ++AG +H+      G+ + WGR DCGQLG       E   L H                  Y N ++         +V A ACG+DH+AVLT DG ++TFGSG YGQ+
Sbjct:  175 GMPLVQVSAGGEHSFALSVSGSVFGWGRNDCGQLGLGDTTDRETPTLVH------------------YLNMKK---------TVFA-ACGKDHTAVLTMDGTVFTFGSGHYGQL 260          
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Match: A0A668S2H1_OREAU (Uncharacterized protein n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668S2H1_OREAU)

HSP 1 Score: 64.7 bits (156), Expect = 1.940e-8
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 0
Query:  193 LEVISLAAGDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQFPTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSGLYGQV 305
            + V+ +AAG + +      G  ++WGR DCGQLG         +  +    TP +V +                 N+   VS+   +CG+DH+A LTKDG ++TFGSG YGQ+
Sbjct:  129 IPVVQVAAGGEQSFALSVSGGVFSWGRNDCGQLG---------LGDTQDRHTPTLVHYL----------------NMKKTVSI---SCGKDHTAALTKDGAVFTFGSGQYGQL 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123888.1797.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN13_ECTSI2.230e-6742.57Regulator of chromosome condensation-like protein ... [more]
A0A6H5KPF1_9PHAE1.060e-5940.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0018AFE07C1.110e-928.64cell wall anchor protein n=1 Tax=Hymenobacter jeon... [more]
A0A8J9ZP77_BRALA1.170e-927.94RCCD1 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A3Q1EBR4_9TELE1.590e-930.58Probable E3 ubiquitin-protein ligase HERC4 n=1 Tax... [more]
UPI0009B4C8593.820e-928.92probable E3 ubiquitin-protein ligase HERC3 n=1 Tax... [more]
A0A521Q7E9_9PROT1.140e-831.19Fibronectin type-III domain-containing protein n=1... [more]
UPI0011EA47F11.650e-828.42probable E3 ubiquitin-protein ligase HERC4 isoform... [more]
A0A3P9J792_ORYLA1.930e-835.09Uncharacterized protein n=1 Tax=Oryzias latipes Ta... [more]
A0A668S2H1_OREAU1.940e-833.63Uncharacterized protein n=1 Tax=Oreochromis aureus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 2..173
e-value: 3.5E-8
score: 34.7
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 186..305
e-value: 1.1E-19
score: 72.3
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 4..304
NoneNo IPR availablePFAMPF13540RCC1_2coord: 195..224
e-value: 1.1E-7
score: 31.5
coord: 275..304
e-value: 1.6E-8
score: 34.2
NoneNo IPR availablePANTHERPTHR22870:SF330E3 UBIQUITIN-PROTEIN LIGASE HERC2coord: 38..304
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 38..304
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 278..288
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 136..211
score: 8.997
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 212..291
score: 12.735

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123888contigH-elongata_contig123888:907..1821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123888.1797.1mRNA_H-elongata_contig123888.1797.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig123888 907..1821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig123888.1797.1 ID=prot_H-elongata_contig123888.1797.1|Name=mRNA_H-elongata_contig123888.1797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
MARLVGCGDSSFCQLPCMCPSSSWRRKRPEGSDVVNALKISQVSCGTSVA
VALVSPAVASRQSYGVVEWGTSMYGEKTSSAAKAGHENSGTKPCGRQNGL
PPPLRHPVEIASMLSGPGVRSISCGAHFVVASVQTGGCITWGGGRDHRAL
GRGGCGSCTSPTCINTGEPSTPPSPPEFGNAAWVAQPLGSGGLEVISLAA
GDDHTVVACADGNAWAWGRGDCGQLGCDTLPASEKIALSHGSCTPMMVQF
PTAAAAACYKNSRQAGDNVSSPVSVHAVACGRDHSAVLTKDGRLWTFGSG
LYGQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens