prot_H-elongata_contig123873.1795.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig123873.1795.1
Unique Nameprot_H-elongata_contig123873.1795.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 65.5 bits (158), Expect = 6.600e-12
Identity = 28/52 (53.85%), Postives = 43/52 (82.69%), Query Frame = 0
Query:   10 WQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            W +V RP+G+ V+  + VFKRK++KDG++E+YK RLVA+G+ QV+GI Y+E+
Sbjct:   63 WDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKET 114          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A2I0KHV5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KHV5_PUNGR)

HSP 1 Score: 63.2 bits (152), Expect = 1.110e-11
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 MDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            MD      VW +V  P+G + +G + +FKRKI  DG++E YK RLVA+G+RQ +G+ YEE+
Sbjct:    1 MDSMSKDQVWDLVDPPEGIVPIGNKWIFKRKIGADGKVETYKARLVAKGYRQKQGVDYEET 61          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: T1IMU7_STRMM (Integrase catalytic domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IMU7_STRMM)

HSP 1 Score: 67.4 bits (163), Expect = 1.260e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0
Query:    5 IARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            I RG W+++ +P    V+G + ++KRK D  G I KYK RLVAQGF+Q+KGI YEES
Sbjct:  484 IKRGTWELISKPPMARVIGCKWIYKRKTDPAGHIIKYKARLVAQGFKQIKGIDYEES 540          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A4Y2JB11_ARAVE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2JB11_ARAVE)

HSP 1 Score: 63.2 bits (152), Expect = 1.420e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0
Query:    7 RGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEE 60
            R VW +V++P    ++G R VF  K D  G+I +YK RLVAQGF+Q+KGIHY+E
Sbjct:   11 RKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDE 64          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: UPI0015ADBDF9 (uncharacterized protein LOC118188897 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ADBDF9)

HSP 1 Score: 65.5 bits (158), Expect = 2.150e-11
Identity = 28/52 (53.85%), Postives = 43/52 (82.69%), Query Frame = 0
Query:   10 WQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            W +V RP+G+ V+  + VFKRK++KDG++E+YK RLVA+G+ QV+GI Y+E+
Sbjct:   14 WDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKET 65          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: UPI000CD98626 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD98626)

HSP 1 Score: 63.2 bits (152), Expect = 2.890e-11
Identity = 27/53 (50.94%), Postives = 41/53 (77.36%), Query Frame = 0
Query:    9 VWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            VWQ+V +PKG  ++GTR V+K K+D+ G + K K RLVA+G+ Q++GI Y+E+
Sbjct:   13 VWQIVSKPKGHTIVGTRWVYKNKLDESGAVVKNKARLVAKGYSQLEGIDYDET 65          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A2I0K9M6_PUNGR (CCHC-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K9M6_PUNGR)

HSP 1 Score: 65.5 bits (158), Expect = 6.040e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 MDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            MD      VW +V  PKG + +G + +FKRKI  DG++E YK RLVA+G+RQ +G+ YEE+
Sbjct:  414 MDSMSKNQVWDLVDPPKGIVPIGNKWIFKRKIGADGKVETYKARLVAKGYRQKQGVDYEET 474          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 60.8 bits (146), Expect = 6.120e-11
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 MDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            +D      VW +V  P+G +++G  +VFKRKI  DG++E YK RLVA+G+RQ + + YEE+
Sbjct:    5 IDSMRENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEET 65          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: UPI0011327E8C (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI0011327E8C)

HSP 1 Score: 63.5 bits (153), Expect = 7.590e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 MDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            +D      VW +V  P+G + +G + VFK+KI  DG++E YK RLVA+GFRQ +GI YEE+
Sbjct:   78 IDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEET 138          
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Match: A0A2I0WG65_9ASPA (Putative mitochondrial protein n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WG65_9ASPA)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-10
Identity = 26/57 (45.61%), Postives = 43/57 (75.44%), Query Frame = 0
Query:    5 IARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEES 61
            +   VW++V+RPKG+ V+GT+ VFK K++  G + + K RLVA+G+ Q++GI +EE+
Sbjct:    9 VRNDVWELVERPKGQSVVGTKWVFKNKVNDSGVVVRNKARLVAKGYNQIEGIDFEET 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123873.1795.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015A81C6A6.600e-1253.85uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A2I0KHV5_PUNGR1.110e-1147.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
T1IMU7_STRMM1.260e-1154.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y2JB11_ARAVE1.420e-1153.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0015ADBDF92.150e-1153.85uncharacterized protein LOC118188897 n=1 Tax=Stego... [more]
UPI000CD986262.890e-1150.94uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A2I0K9M6_PUNGR6.040e-1149.18CCHC-type domain-containing protein n=1 Tax=Punica... [more]
A0A2I0HGX5_PUNGR6.120e-1145.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0011327E8C7.590e-1149.18hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
A0A2I0WG65_9ASPA1.270e-1045.61Putative mitochondrial protein n=2 Tax=Dendrobium ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..60
e-value: 2.3E-13
score: 50.4
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 10..60
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123873contigH-elongata_contig123873:2..184 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123873.1795.1mRNA_H-elongata_contig123873.1795.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig123873 2..214 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig123873.1795.1 ID=prot_H-elongata_contig123873.1795.1|Name=mRNA_H-elongata_contig123873.1795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MDGKIARGVWQVVKRPKGKMVLGTRVVFKRKIDKDGRIEKYKCRLVAQGF
RQVKGIHYEES
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like