prot_H-elongata_contig12372.1790.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12372.1790.1
Unique Nameprot_H-elongata_contig12372.1790.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length579
Homology
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BLAST of mRNA_H-elongata_contig12372.1790.1 vs. uniprot
Match: D8LC61_ECTSI (Putative copper transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC61_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 8.720e-59
Identity = 115/181 (63.54%), Postives = 138/181 (76.24%), Query Frame = 0 
Query:  396 GVKANARSNLPRTDSPGFPSQSHTYISLSVKGMMCMENCGQMVQQALGEVSGVRSVTVHFPTRTASVQVKPGSNVAIADLTNALEVIGFESKCVATSTSEESTLEEAGVNAVWAIASALGLVDRGCAMAWGDACNCGDGCKCVNCSQHMKKVSHAVDLVLKAVDLSSTSNPTSPAQGSPAP 576
            G KA  R+    T  P    Q+ ++ISLSV GMMCMENCGQ VQQAL +V GV SVT+HFPTRTAS++V   +NV + DLT+AL+ IGF S CVAT+T++E TLE+ GVNAVWAIA+ALGLVD GCAMAWG  C+CGD C+C+NC QHMKKVSHAVDLVL+A DLSS+  P  P +  P P
Sbjct:  656 GHKAPERTRACSTSPPA--EQTSSFISLSVSGMMCMENCGQTVQQALKKVPGVLSVTIHFPTRTASIKVDAKANVTLGDLTSALDAIGFGSSCVATTTTQEPTLEQDGVNAVWAIANALGLVDPGCAMAWGRPCSCGDDCRCINCPQHMKKVSHAVDLVLQAADLSSSKAP--PEEPKPKP 832
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BLAST of mRNA_H-elongata_contig12372.1790.1 vs. uniprot
Match: A0A6H5KKC5_9PHAE (HMA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC5_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.730e-31
Identity = 74/120 (61.67%), Postives = 92/120 (76.67%), Query Frame = 0 
Query:  396 GVKANARSNLPRTDSPGFPSQSHTYISLSVKGMMCMENCGQMVQQALGEVSGVRSVTVHFPTRTASVQVKPGSNVAIADLTNALEVIGFESKCVATSTSEESTLEEAGVNAVWAIASALG 515
            G KA  R+    T  P    Q+ ++ISLSV GMMCMENCGQ VQQAL +V GV SVT+HFPTRTAS++V   +NV + DLT+AL+ IGF+S CVAT+T++E TLE+ GVNAVWAIA+ALG
Sbjct:  800 GDKAPERTRACSTSPPA--EQTSSFISLSVSGMMCMENCGQTVQQALKKVPGVLSVTIHFPTRTASIKVDTEANVTLGDLTSALDAIGFDSSCVATTTAQEPTLEQDGVNAVWAIANALG 917
[Close]
BLAST of mRNA_H-elongata_contig12372.1790.1 vs. uniprot
Match: A0A836CMV3_9STRA (HMA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMV3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 8.370e-25
Identity = 75/196 (38.27%), Postives = 96/196 (48.98%), Query Frame = 0 
Query:  396 GVKANARSNLPRTDSPGFPSQSHTYISLSVKGMMCMENCGQMVQQALGEVSGVRSVTVHFPTRTASVQVKPGSNVAIADLTNALEVIGFESKCVATS-----------------------------------------------TSEESTLEEAGVNAVWAIASALGLVDRGCAMAWGDACNCG-DGCKCVNCSQH 543
            G  A+ARS            +  TY+SL+V+GMMCM +CG+ V++ L  V GV +V+VHFPTRTASVQV P S   I  L   LE +GF++ C++                                                 TSEE  + ++  NAVWAIA  LGLVDRGC M+WG AC C  D C+C NC  H
Sbjct: 1039 GDTAHARSPTSAPXXXXXXXRRATYVSLAVEGMMCMRDCGETVRRCLAGVPGVVTVSVHFPTRTASVQVDPASGAGIETLVERLEAVGFQATCISRCAVDMQSMCRVMRNVRSSQGTLRVLQSIXXXXXXXXXXXXXXXXXXXXTSEEPMVAQSE-NAVWAIAEVLGLVDRGCPMSWGGACACDPDKCRCTNCDVH 1233
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12372.1790.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC61_ECTSI8.720e-5963.54Putative copper transporter n=1 Tax=Ectocarpus sil... [more]
A0A6H5KKC5_9PHAE2.730e-3161.67HMA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CMV3_9STRA8.370e-2538.27HMA domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006121Heavy metal-associated domain, HMAPFAMPF00403HMAcoord: 423..484
e-value: 6.0E-6
score: 26.6
IPR006121Heavy metal-associated domain, HMAPROSITEPS50846HMA_2coord: 420..488
score: 13.985
NoneNo IPR availableGENE3D3.30.70.100coord: 420..490
e-value: 1.7E-12
score: 49.6
IPR036163Heavy metal-associated domain superfamilySUPERFAMILY55008HMA, heavy metal-associated domaincoord: 416..487

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12372contigH-elongata_contig12372:3600..6589 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12372.1790.1mRNA_H-elongata_contig12372.1790.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12372 1052..8603 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12372.1790.1 ID=prot_H-elongata_contig12372.1790.1|Name=mRNA_H-elongata_contig12372.1790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=579bp
MRRTRTRPSAVPPPPLADVRCCTGYASPPLPSIASMGMMRQMPDPRATEA
LECVPYLRKPILTFAAGVNDPPAPLSSPDLTSSVDGRPNPRLPVSFFDEK
VKVKVSARSTQAPSKEEAGVRSSSEASRNVQRPLPNFSSIASSPKRDCAA
FRLERVRNLTGSLAAAVGDPPEPSNVTASDPFFSPEDVPLAKYFAGKRSN
NRCDDVAALALRRVSGPAQRHDHGGSERSPLLESLLPPSRLHSPNLTPPL
STDYRLATLAAQPRVADGGSDDIVEGWPQHPYPKVAEPYHVSGGRKDPSD
VPMWTGVAPGAFAADPPPVDVTATARRATAPLPASAACGNSLSPSEGNPL
GAPQDDDPMVVSESMKELPQPNMVTQPHSSEDSFAEDDTQEGVPAGVKAN
ARSNLPRTDSPGFPSQSHTYISLSVKGMMCMENCGQMVQQALGEVSGVRS
VTVHFPTRTASVQVKPGSNVAIADLTNALEVIGFESKCVATSTSEESTLE
EAGVNAVWAIASALGLVDRGCAMAWGDACNCGDGCKCVNCSQHMKKVSHA
VDLVLKAVDLSSTSNPTSPAQGSPAPSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006121HMA_dom
IPR036163HMA_dom_sf