prot_H-elongata_contig123684.1785.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig123684.1785.1
Unique Name	prot_H-elongata_contig123684.1785.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	228

Homology

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BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.960e-35
Identity = 90/228 (39.47%), Postives = 124/228 (54.39%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDY---ITPQELSIKCVRTDNGSEFEGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIAL-IEELDNIINVPREK-LWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSVREHKMVPKGEKCLFMGIP 225
            +KG+   + K+TD RA+ K  R F+++GG M+  S+ GN Y +I  DD TR+  V F+K KSD  AA    + DY     P E+ +   RTD G EF+G+F     R  I  E TPP+TP+YNGVAE ALGLL + A+A  I+  +   + P    LWA+AI  AC   N +  T   G KSP EL+ G  P      PF       +S R+ +  P+  K   +G+P
Sbjct:  175 SKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLP 399

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BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.130e-34
Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 223
            AKG    +P  T  RA  K QR FVD+ G  +  SL G  Y +I  DDYTR+  V F+K KSD   A    + +      P ++ +  VR+DNG EF EGEF R   +  I  E TP  +P+YNGVAE ALGL+++ A+A   +   +     N P   LWA+AI ++C+  N +  TS    KSPYE+W G  P      PF  ++ A   V R HK  PK +KC ++G
Sbjct:  714 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 937

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BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.130e-34
Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 223
            AKG    +P  T  RA  K QR FVD+ G  +  SL G  Y +I  DDYTR+  V F+K KSD   A    + +      P ++ +  VR+DNG EF EGEF R   +  I  E TP  +P+YNGVAE ALGL+++ A+A   +   +     N P   LWA+AI ++C+  N +  TS    KSPYE+W G  P      PF  ++ A   V R HK  PK +KC ++G
Sbjct:  549 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 772

[Close]

BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.140e-34
Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 223
            AKG    +P  T  RA  K QR FVD+ G  +  SL G  Y +I  DDYTR+  V F+K KSD   A    + +      P ++ +  VR+DNG EF EGEF R   +  I  E TP  +P+YNGVAE ALGL+++ A+A   +   +     N P   LWA+AI ++C+  N +  TS    KSPYE+W G  P      PF  ++ A   V R HK  PK +KC ++G
Sbjct:  562 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 785

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BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.140e-34
Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 223
            AKG    +P  T  RA  K QR FVD+ G  +  SL G  Y +I  DDYTR+  V F+K KSD   A    + +      P ++ +  VR+DNG EF EGEF R   +  I  E TP  +P+YNGVAE ALGL+++ A+A   +   +     N P   LWA+AI ++C+  N +  TS    KSPYE+W G  P      PF  ++ A   V R HK  PK +KC ++G
Sbjct:  705 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 928

[Close]

BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.000e-34
Identity = 91/226 (40.27%), Postives = 122/226 (53.98%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYITPQELS-IKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII-NVPREK-LWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 223
            AKG    +P  T  RA  K QRFFV++ G  +  SL G  Y +I  DDYTR+  V F+K KSD   A    + +       S +  VR+DNG EF EGEF R   +  I  E TP  +P+YNGVAE ALGL+++ AIA   +   +    P  + LWA+AI ++C+  N +  TS    KSPYE+W G  P      PF  ++ A   V R HK  P  +KC ++G
Sbjct:  347 AKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPTAQKCFYLG 570

[Close]

BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 5.730e-34
Identity = 89/228 (39.04%), Postives = 120/228 (52.63%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYITPQELSIKCV-RTDNGSEFEGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIAL-IEELDNIINVPREK-LWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSVREHKMVPKGEKCLFMGIPRN 227
            +KG+   V K+T  RA  K  R ++D+GG MK  S+ GN Y +I  DD++R+  V F+K KSD        + DY T       C+ RTD G EF+G+F     R  I  E TPP TP+YNGVAE ALGL+ + A+A  I+      + P    LWA+AI  AC   N +   S +G KS YE++    P      PF       +S R+ K  PKGEK  ++G   N
Sbjct:    2 SKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHN 228

[Close]

BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 6.910e-34
Identity = 90/230 (39.13%), Postives = 124/230 (53.91%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 223
            AKG    +P  T  RA+ + QR F+D+ G  +  SLVG  Y +I  D YTR+  V F+K KSD   A    + +      P ++ +  VR+DNG EF EGEF R   +  I  E TP  +P+YNGVAE ALGL+++ A+A   +   +     N P    WA+AI +AC+  N +  TS    KSPYE+W G  P      PF  ++ A   V R HK  PK +KC ++G
Sbjct:  575 AKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYP--SFWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 798

[Close]

BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 8.220e-33
Identity = 86/221 (38.91%), Postives = 115/221 (52.04%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSVREHKMVPK 215
            AKG    +P  T  RA  K QR FVD+ G  +  SL G  Y +I  DDYTR+  V F+K KSD   A    + +      P ++ +  VR+DNG EF EGEF R   +  I  E TP  +P+Y+GVAE ALGL+ + A+A   +   +     N P   LWA+AI ++C+  N +  TS    KSPYE+W G  P      PF  +    +  R HK  PK
Sbjct:   15 AKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LIPAVYKVKRTHKSEPK 230

[Close]

BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.910e-32
Identity = 89/230 (38.70%), Postives = 122/230 (53.04%), Query Frame = 0

Query:    3 AKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVDYIT---PQELSIKCVRTDNGSEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNII----NVPREKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAMRYARRSV-REHKMVPKGEKCLFMG 223
            AKG    +P  T   A  K QR FVD+ G ++  SL G  Y +I  DDYTR+  V F+K KSD   A    + +      P ++ +  VR+DNG EF EGEF R   +  I  E TP   P++NGVAE ALG +++ A+A   +   +     N P   LWA+AI ++C+  N +  TS    KSPYE+W G  P      PF  ++ A   V R HK  PK +KC ++G
Sbjct:  550 AKGLSKPIPNKTSTGALKKLQRVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHIPEHNGVAERALGPIKDAALAARIQAPTLYPGAPNYP--SLWAKAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 773

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot

BLAST of mRNA_H-elongata_contig123684.1785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LL52_9PHAE	3.960e-35	39.47	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JTI6_9PHAE	1.130e-34	40.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZQ8_9PHAE	1.130e-34	40.00	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	1.140e-34	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF60_9PHAE	1.140e-34	40.00	Uncharacterized protein n=12 Tax=Ectocarpus sp. CC...	[more]
A0A6H5K1N9_9PHAE	2.000e-34	40.27	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KAM7_9PHAE	5.730e-34	39.04	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JXF7_9PHAE	6.910e-34	39.13	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5J7U9_9PHAE	8.220e-33	38.91	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L3E0_9PHAE	4.910e-32	38.70	Integrase catalytic domain-containing protein (Fra...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 11..211 e-value: 6.8E-24 score: 86.2
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 21..134 e-value: 1.2E-15 score: 57.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 17..188 score: 19.16
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..223
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 4..223
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 22..196

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig123684	contig	H-elongata_contig123684:1085..1768 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig123684.1785.1	mRNA_H-elongata_contig123684.1785.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig123684 1085..1768 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig123684.1785.1 ID=prot_H-elongata_contig123684.1785.1|Name=mRNA_H-elongata_contig123684.1785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
FQAKGKRYAVPKTTDERASMKGQRFFVDVGGPMKHSSLVGNSYVVIFVDD
YTRFKVVKFVKRKSDTTAALLSLIVDYITPQELSIKCVRTDNGSEFEGEF
QRELDRRSITHEHTPPDTPQYNGVAEHALGLLREKAIALIEELDNIINVP
REKLWAQAILFACDVTNKSVMTSTDGVKSPYELWFGKIPTADHLRPFGAM
RYARRSVREHKMVPKGEKCLFMGIPRNF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf