prot_H-elongata_contig123678.1784.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig123678.1784.1
Unique Nameprot_H-elongata_contig123678.1784.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A0P1AHI5_PLAHL (Polyprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHI5_PLAHL)

HSP 1 Score: 55.8 bits (133), Expect = 4.320e-8
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    2 VLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW 63
            VL ++AA+G+   QLDVD A+L  K+KEE+Y+E+P +  ++   +  L K +YGL  A   W
Sbjct:    7 VLAVVAAMGYVTEQLDVDTAFLNGKLKEEVYMEVPHSIVNATNMMCKLDKAIYGLRQAASAW 68          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A699J4D0_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699J4D0_TANCI)

HSP 1 Score: 54.3 bits (129), Expect = 5.890e-7
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   10 GWEVRQLDVDMAYLEVKVKEEIYVELPEAY-RDSRKQVSLLKKVMYGLVHAELLW 63
            GWE+RQLDVD A+L   ++EE+Y+++P+ + +++  +V  LKK +YGL  A   W
Sbjct:  202 GWEIRQLDVDNAFLHGDLEEEVYMKIPQGFSKENETRVCKLKKSIYGLKQASRNW 256          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A8J6DDM6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DDM6_9ROSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.970e-7
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 0
Query:    2 VLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW 63
            +L + A L W + QLDV  A+L  ++ EE+Y++ P  + +S+ QV  LKK +YGL  +   W
Sbjct:  439 LLSLAANLDWHLTQLDVKNAFLNGELNEEVYIDFPPGFEESKGQVCKLKKSLYGLKQSPRAW 500          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A803PR46_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PR46_CANSA)

HSP 1 Score: 53.9 bits (128), Expect = 8.060e-7
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0
Query:    2 VLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQ--VSLLKKVMYGLVHAELLW 63
            +L +  + GW+VRQLD++ A+L  K++E++Y+E P+ + D  K   V  L+K +YGL  A   W
Sbjct:   97 ILTIAVSNGWDVRQLDINNAFLNGKLEEDVYMEQPQGFEDKEKPDYVCKLEKSLYGLKQAPRAW 160          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A8J6D396_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D396_9ROSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.120e-6
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 0
Query:    2 VLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW 63
            +L + A L W + QLDV  A+L  ++ EE+Y++ P  + +S+ QV  LKK +YGL  +   W
Sbjct:  887 LLSLAANLDWHLTQLDVKNAFLNGELSEEVYMDFPPGFEESKGQVCKLKKSLYGLKQSPRAW 948          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: UPI0006A6E8A3 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6E8A3)

HSP 1 Score: 53.1 bits (126), Expect = 1.490e-6
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 0
Query:    1 MVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAY--RDSRKQVSLLKKVMYGLVHAELLW 63
            +VLG   A GW +RQLDV+ A+L+  + E++Y+  P  +  RD    V  L+K +YGL  A   W
Sbjct:   77 LVLGQAVARGWSLRQLDVNNAFLQGNLNEDVYIAQPAGFVDRDKPHYVCKLRKALYGLKQAPRAW 141          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: A0A8J5Z0V2_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z0V2_9ROSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.540e-6
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 0
Query:    2 VLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW 63
            +L + A L W + QLDV  A+L  ++ EE+Y++ P  + +S+ QV  LKK +YGL  +   W
Sbjct:  669 LLSLAANLDWHLTQLDVKNAFLNRELSEEVYMDFPPGFEESKGQVCKLKKSLYGLKQSPPAW 730          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: UPI001D05B923 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D05B923)

HSP 1 Score: 52.8 bits (125), Expect = 2.030e-6
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 MVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW 63
            ++L + A  GW  +Q+DV  A+L   +KEEIY+ELPE YR   K V  L+K +YGL  +   W
Sbjct:  174 LLLALAAHNGWTPQQMDVKSAFLYGVLKEEIYMELPEGYRQDNK-VCKLRKCIYGLQQSPREW 235          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: UPI001D0544A3 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D0544A3)

HSP 1 Score: 52.0 bits (123), Expect = 3.900e-6
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 MVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW 63
            ++L + A  GW  +Q+DV  A+L   +KEEIY+ELPE YR   K V  L+K +YGL  +   W
Sbjct:  421 LLLALAAHNGWIPQQMDVKSAFLYGVLKEEIYMELPEGYRQDNK-VCKLRKCIYGLKQSPREW 482          
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Match: UPI001D03B6E3 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D03B6E3)

HSP 1 Score: 52.0 bits (123), Expect = 3.900e-6
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 MVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLKKVMYGLVHAELLW 63
            ++L + A  GW  +Q+DV  A+L   +KEEIY+ELPE YR   K V  L+K +YGL  +   W
Sbjct:  478 LLLALAAHNGWIPQQMDVKSAFLYGVLKEEIYMELPEGYRQDNK-VCKLRKCIYGLKQSPREW 539          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123678.1784.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P1AHI5_PLAHL4.320e-841.94Polyprotein n=1 Tax=Plasmopara halstedii TaxID=478... [more]
A0A699J4D0_TANCI5.890e-743.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6DDM6_9ROSI5.970e-738.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A803PR46_CANSA8.060e-739.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6D396_9ROSI1.120e-638.71Integrase catalytic domain-containing protein n=1 ... [more]
UPI0006A6E8A31.490e-640.00uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A8J5Z0V2_9ROSI1.540e-638.71Integrase catalytic domain-containing protein n=1 ... [more]
UPI001D05B9232.030e-644.44uncharacterized protein n=1 Tax=Morchella sextelat... [more]
UPI001D0544A33.900e-644.44uncharacterized protein n=1 Tax=Morchella sextelat... [more]
UPI001D03B6E33.900e-644.44uncharacterized protein n=1 Tax=Morchella sextelat... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..63
e-value: 2.8E-10
score: 40.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123678contigH-elongata_contig123678:417..608 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123678.1784.1mRNA_H-elongata_contig123678.1784.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig123678 102..908 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig123678.1784.1 ID=prot_H-elongata_contig123678.1784.1|Name=mRNA_H-elongata_contig123678.1784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVLGMIAALGWEVRQLDVDMAYLEVKVKEEIYVELPEAYRDSRKQVSLLK
KVMYGLVHAELLW*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2