prot_H-elongata_contig123335.1768.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig123335.1768.1
Unique Nameprot_H-elongata_contig123335.1768.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length60
Homology
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.420e-32
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFFNSPKPG LVGKLNWRIKEPDGEFFTRDVVQ F QDPKNPAHLVNKDNEYLHYR D
Sbjct:  173 QVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQTFDQDPKNPAHLVNKDNEYLHYRDD 232          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7R9W8D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8D9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.030e-26
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF    PG   GKLNWRI+EPDGEFFTRD +Q+F QDP+NPAHL+N DNEYLHY  D
Sbjct:    8 QVHFFTETSPGKFFGKLNWRIQEPDGEFFTRDALQRFVQDPENPAHLINHDNEYLHYEDD 67          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A6V0W7S4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0W7S4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.900e-24
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF   +PG   GKLNWRI+EPDGEFFTRD +Q+F QDPKNPAHL+N DNEYLHY+ D
Sbjct:  215 QVHFFTETEPGKFFGKLNWRIEEPDGEFFTRDAIQEFYQDPKNPAHLINHDNEYLHYQDD 274          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: B8C775_THAPS (Diadinoxanthin de-epoxidase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C775_THAPS)

HSP 1 Score: 102 bits (255), Expect = 2.510e-24
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF    PG  VGKLNWRI+EPDGEFFTRD VQ+F QDP NPAHL+N DNEYLHY+ D
Sbjct:  224 QVHFFTETAPGKFVGKLNWRIEEPDGEFFTRDAVQEFVQDPNNPAHLINHDNEYLHYQDD 283          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7S2FML7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FML7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.980e-24
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF SP+ G+L GKLNWRI EPDGEFFT++ VQ+F QDPKNP  L N DNEYLHY+ D
Sbjct:   41 QVHFFTSPQEGVLYGKLNWRIVEPDGEFFTKNAVQRFVQDPKNPGILYNHDNEYLHYKDD 100          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.370e-24
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF SPKPG+L GKLNWRI EPDGEFFTR+ VQ+FKQDP  P  L N DNEYLHY+ D
Sbjct:  150 QVHFFTSPKPGLLYGKLNWRIVEPDGEFFTRNAVQRFKQDPSMPGVLYNHDNEYLHYQDD 209          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A1Z5JG75_FISSO (Violaxanthin de-epoxidase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG75_FISSO)

HSP 1 Score: 100 bits (248), Expect = 2.380e-23
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF  P+PG   G+LNWR++ PDGEFFTRD +Q+F QDPK PAHL+N DNEYLHY+ D
Sbjct:  219 QVHFFTEPEPGTFFGQLNWRVENPDGEFFTRDALQRFVQDPKQPAHLINHDNEYLHYKDD 278          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7S4NGD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGD3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.910e-23
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF    PG   GKLNWRI+EPDGEF+TRD +Q+F QDP+NPAHLVN DNEYLHY  D
Sbjct:  228 QVHFFTETAPGKFFGKLNWRIQEPDGEFYTRDALQRFVQDPENPAHLVNHDNEYLHYEDD 287          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A1E7FV42_9STRA (Violaxanthin de-epoxidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV42_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.260e-23
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF    PG   GKLNWRI+EPDGEFF RD VQ+F QDPK PAHLVN DNEYLHY+ D
Sbjct:  228 QVHFFTETAPGKFYGKLNWRIEEPDGEFFNRDAVQEFIQDPKQPAHLVNHDNEYLHYQDD 287          
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Match: A0A7S2A2S3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2S3_TRICV)

HSP 1 Score: 98.6 bits (244), Expect = 9.340e-23
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNKDNEYLHYRGD 60
            +VHFF   +PG   GKLNWRI+EPDGEFFTRD +Q F QDPK PAHL+N DNEYLHY  D
Sbjct:  241 QVHFFTETEPGKFFGKLNWRIQEPDGEFFTRDAIQVFVQDPKMPAHLINHDNEYLHYEDD 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123335.1768.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8F1_9PHAE7.420e-3291.67VDE domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9W8D9_9STRA6.030e-2670.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A6V0W7S4_9STRA1.900e-2471.67Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8C775_THAPS2.510e-2473.33Diadinoxanthin de-epoxidase n=1 Tax=Thalassiosira ... [more]
A0A7S2FML7_9STRA7.980e-2470.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2SKA3_9STRA8.370e-2473.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5JG75_FISSO2.380e-2366.67Violaxanthin de-epoxidase n=2 Tax=Fistulifera sola... [more]
A0A7S4NGD3_9STRA4.910e-2370.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1E7FV42_9STRA8.260e-2371.67Violaxanthin de-epoxidase n=1 Tax=Fragilariopsis c... [more]
A0A7S2A2S3_TRICV9.340e-2370.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010788VDE lipocalin domainPFAMPF07137VDEcoord: 2..58
e-value: 7.6E-16
score: 58.4
IPR012674CalycinGENE3D2.40.128.20coord: 1..60
e-value: 1.0E-11
score: 46.9
NoneNo IPR availablePANTHERPTHR33970:SF1VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTICcoord: 2..60
NoneNo IPR availablePANTHERPTHR33970FAMILY NOT NAMEDcoord: 2..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123335contigH-elongata_contig123335:404..583 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123335.1768.1mRNA_H-elongata_contig123335.1768.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig123335 404..583 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig123335.1768.1 ID=prot_H-elongata_contig123335.1768.1|Name=mRNA_H-elongata_contig123335.1768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
KVHFFNSPKPGMLVGKLNWRIKEPDGEFFTRDVVQKFKQDPKNPAHLVNK
DNEYLHYRGD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010788VDE
IPR012674Calycin