prot_H-elongata_contig122990.1750.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig122990.1750.1
Unique Nameprot_H-elongata_contig122990.1750.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A6H5K2Z4_9PHAE (TMF_TATA_bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.370e-23
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0
Query:    1 MHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 61
            + A RDALTEEVTSLGRRNTELEALAKA P+LRDQAL+LQ KN VLLDLLGEKTE+LEA+Q
Sbjct: 1270 VQATRDALTEEVTSLGRRNTELEALAKAVPLLRDQALELQDKNGVLLDLLGEKTEDLEAVQ 1330          
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: D7G6G4_ECTSI (TMF_TATA_bd domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.370e-23
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0
Query:    1 MHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 61
            + A RDALTEEVTSLGRRNTELEALAKA P+LRDQAL+LQ KN VLLDLLGEKTE+LEA+Q
Sbjct: 1279 VQATRDALTEEVTSLGRRNTELEALAKAVPLLRDQALELQDKNGVLLDLLGEKTEDLEAVQ 1339          
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A835ZDC3_9STRA (TATA element modulatory factor 1 TATA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDC3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.960e-10
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    5 RDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAM 60
            RDAL +EV +LGRR+ ELEA     P   +QA +L  KN VLL+LLGEK EE+E +
Sbjct:   29 RDALADEVAALGRRSAELEAALSTLPDTVEQAQELARKNNVLLELLGEKEEEVEQL 84          
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A7S2BWU5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWU5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.450e-10
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0
Query:    4 VRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 61
            VRDALT EV  LG+RN +L   A  A  +  +A   + KN VLL+LLGEKTEELE +Q
Sbjct:   50 VRDALTSEVLELGKRNQDLSKAASKAATMERKASAFKKKNDVLLELLGEKTEELEDLQ 107          
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A7S2HQC5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQC5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.100e-10
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query:    5 RDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 61
            RDALT EV  LG RN EL   A   P+L  +AL  + KN +LL+LLGEK+EELE +Q
Sbjct:  324 RDALTSEVLDLGERNQELMKAAARCPVLEKRALATKKKNDILLELLGEKSEELEELQ 380          
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A7S2SPH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPH7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.440e-9
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    4 VRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQ 61
            VRDALT E+  LGR+N E + LA+ +  L+ +   L  KN +LL+LLGEKTEELE  Q
Sbjct:  613 VRDALTHELQELGRQNAEFKVLAEQSAALKQEVKVLVKKNDLLLELLGEKTEELEEAQ 670          
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Match: A0A4D9CLU0_9STRA (TMF_TATA_bd domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLU0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.340e-6
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    1 MHAVRDALTEEVTSLGRRNT--ELEALAKAAPILRDQALDLQHKNTVLLDLLGEKTEELEAMQVK 63
            +   RDALTEEVT LGR+N+    +A+  AA + + + L  + +  VLL+LLGEKTEE+EA++ +
Sbjct:  632 LERTRDALTEEVTVLGRQNSLQAAKAMRSAAEVTKLRGLSKEKE--VLLELLGEKTEEVEALEAE 694          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122990.1750.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K2Z4_9PHAE8.370e-2383.61TMF_TATA_bd domain-containing protein n=1 Tax=Ecto... [more]
D7G6G4_ECTSI8.370e-2383.61TMF_TATA_bd domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZDC3_9STRA2.960e-1055.36TATA element modulatory factor 1 TATA binding prot... [more]
A0A7S2BWU5_9STRA5.450e-1055.17Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2HQC5_9STRA8.100e-1056.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SPH7_9STRA7.440e-953.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CLU0_9STRA5.340e-646.15TMF_TATA_bd domain-containing protein n=1 Tax=Nann... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
IPR022091TATA element modulatory factor 1, TATA bindingPFAMPF12325TMF_TATA_bdcoord: 3..60
e-value: 1.9E-8
score: 34.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122990contigH-elongata_contig122990:87..1336 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122990.1750.1mRNA_H-elongata_contig122990.1750.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig122990 66..1336 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig122990.1750.1 ID=prot_H-elongata_contig122990.1750.1|Name=mRNA_H-elongata_contig122990.1750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MHAVRDALTEEVTSLGRRNTELEALAKAAPILRDQALDLQHKNTVLLDLL
GEKTEELEAMQVK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022091TMF_TATA-bd