prot_H-elongata_contig122911.1744.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig122911.1744.1
Unique Nameprot_H-elongata_contig122911.1744.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
[Close]
BLAST of mRNA_H-elongata_contig122911.1744.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.910e-15
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:    1 ASGCRCGDVLSVWTPNTAATVTTCGRLQAGFLSGVYNRHV-----ELQSKGDNVGYALARTVRSNIQHHASKAMGATGMGNQCRRG 81
            A GC C      W  +    +TTCGR QA  ++GV  +HV     E  S+GDNV Y LARTVR  +Q+ A++ +GA+G GNQCRRG
Sbjct:  109 AKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRG 194
[Close]
BLAST of mRNA_H-elongata_contig122911.1744.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.040e-13
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 0 
Query:    1 ASGCRCGDVLSVWTPNTAATVTTCGRLQAGFLSGVYNRHV-----ELQSKGDNVGYALARTVRSNIQHHASKAMGATGMGNQCRRG 81
            A GC C   L+ W            R QA  ++GV  +HV        S+GDNV Y LARTVRSN+Q+ A++ +GATG GNQCRRG
Sbjct:   76 AQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122911.1744.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.910e-1547.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.040e-1346.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122911contigH-elongata_contig122911:1197..1928 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122911.1744.1mRNA_H-elongata_contig122911.1744.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig122911 1197..1928 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig122911.1744.1 ID=prot_H-elongata_contig122911.1744.1|Name=mRNA_H-elongata_contig122911.1744.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
ASGCRCGDVLSVWTPNTAATVTTCGRLQAGFLSGVYNRHVELQSKGDNVG
YALARTVRSNIQHHASKAMGATGMGNQCRRG
back to top