prot_H-elongata_contig122209.1700.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig122209.1700.1
Unique Nameprot_H-elongata_contig122209.1700.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
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BLAST of mRNA_H-elongata_contig122209.1700.1 vs. uniprot
Match: A0A6H5KRN1_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN1_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.250e-26
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 AYRVLYVSVCAVAFVNAMTYSVLGPFLPAYVSERFGSASTEVGMIMAAYPAMNLVTSPLVGLLVTR 66
            AYR+LYVS C+VAFVNAMT+SVLGPFLPAY+++RFG  ST+VGMIMAAYPA+NL  SPLVG ++ R
Sbjct:   24 AYRLLYVSACSVAFVNAMTFSVLGPFLPAYIADRFGRTSTQVGMIMAAYPAVNLAASPLVGWVMNR 89
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BLAST of mRNA_H-elongata_contig122209.1700.1 vs. uniprot
Match: D7G1X7_ECTSI (Major facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X7_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.910e-15
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 0 
Query:   18 MTYSVLGPFLPAYVSERFGSASTEVGMIMAAYPAMNLVTSPLVGLLVTR 66
            MT+SVLGPFLPAY+++RFGS ST+VGMIMAAYPA+NL  SPLVG ++ R
Sbjct:    1 MTFSVLGPFLPAYIADRFGSTSTQVGMIMAAYPAVNLAASPLVGWVMYR 49
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BLAST of mRNA_H-elongata_contig122209.1700.1 vs. uniprot
Match: A0A836CL52_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL52_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.340e-9
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0 
Query:   21 SVLGPFLPAYVSERFGSASTEVGMIMAAYPAMNLVTSPLVGLLVTR 66
            SVLGPFLP Y   RFGS+  +VG+IMA YPA NL+ SP VG +  R
Sbjct:  551 SVLGPFLPNYAERRFGSSPAQVGIIMAVYPAFNLLASPWVGYVANR 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122209.1700.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRN1_9PHAE1.250e-2674.24MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1X7_ECTSI1.910e-1573.47Major facilitator superfamily permease n=1 Tax=Ect... [more]
A0A836CL52_9STRA3.340e-960.87Major facilitator superfamily domain-containing pr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 5..66
e-value: 7.2E-11
score: 43.8
NoneNo IPR availablePANTHERPTHR23506FAMILY NOT NAMEDcoord: 5..65
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..66
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..42
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..64
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableTMHMMTMhelixcoord: 42..64
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 10..66
e-value: 1.3E-8
score: 34.2
IPR036259MFS transporter superfamilySUPERFAMILY103473MFS general substrate transportercoord: 6..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122209contigH-elongata_contig122209:1047..1620 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122209.1700.1mRNA_H-elongata_contig122209.1700.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig122209 1047..1620 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig122209.1700.1 ID=prot_H-elongata_contig122209.1700.1|Name=mRNA_H-elongata_contig122209.1700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
AYRVLYVSVCAVAFVNAMTYSVLGPFLPAYVSERFGSASTEVGMIMAAYP
AMNLVTSPLVGLLVTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR036259MFS_trans_sf