prot_H-elongata_contig121666.1655.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig121666.1655.1
Unique Nameprot_H-elongata_contig121666.1655.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
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BLAST of mRNA_H-elongata_contig121666.1655.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0 
Query:    1 PLDEQTYNIVIELCKECGETSKALGILRSMSAAG 34
            PLDEQT+NI IELCKECG+TS A+GILR+M  AG
Sbjct:  725 PLDEQTHNIAIELCKECGDTSTAVGILRTMEGAG 758
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BLAST of mRNA_H-elongata_contig121666.1655.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0 
Query:    1 PLDEQTYNIVIELCKECGETSKALGILRSMSAAG 34
            PLDEQT+NI IELCKECG+TS A+GILR+M  AG
Sbjct:  774 PLDEQTHNIAIELCKECGDTSTAVGILRAMEGAG 807
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121666.1655.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZI4_9PHAE6.090e-976.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9B5_ECTSI6.090e-976.47PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..45
e-value: 2.7E-5
score: 25.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 6..36
e-value: 6.1E-6
score: 24.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 3..37
score: 9.46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121666contigH-elongata_contig121666:171..305 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121666.1655.1mRNA_H-elongata_contig121666.1655.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig121666 171..305 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig121666.1655.1 ID=prot_H-elongata_contig121666.1655.1|Name=mRNA_H-elongata_contig121666.1655.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
PLDEQTYNIVIELCKECGETSKALGILRSMSAAGVSHGRVVVGSF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat