prot_H-elongata_contig12097.1612.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12097.1612.1
Unique Nameprot_H-elongata_contig12097.1612.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length109
Homology
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BLAST of mRNA_H-elongata_contig12097.1612.1 vs. uniprot
Match: D8LUA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.090e-15
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   54 PIGGLRHLSNLRGLPSLMELTLDDIHFGACPVVAVKGYRDFVMCYLRQVGEREGV 108
            PI G+RHLS LRGLPSLMELTLDDIHFG CPVVA  GYR FV+  L QV   +G+
Sbjct:  118 PIVGVRHLSGLRGLPSLMELTLDDIHFGTCPVVAKAGYRSFVLRCLSQVRRLDGL 172
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BLAST of mRNA_H-elongata_contig12097.1612.1 vs. uniprot
Match: A0A7S1G818_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G818_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.120e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 0 
Query:   70 LMELTLDDIHFGACPVVAVKGYRDFVMCYLRQVGEREG 107
            L  L+ DD+H+G+CPV+   GYRDFV+C LRQ+ E +G
Sbjct:  231 LRSLSFDDVHYGSCPVINADGYRDFVLCTLRQLTELDG 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12097.1612.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUA4_ECTSI2.090e-1570.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1G818_9STRA3.120e-655.26Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..107
e-value: 1.3E-17
score: 65.3
NoneNo IPR availablePANTHERPTHR46652:SF4LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9coord: 1..102
NoneNo IPR availablePANTHERPTHR46652FAMILY NOT NAMEDcoord: 1..102
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 1..101
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1..21
score: 7.127
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 44..65
score: 7.304
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 22..43
score: 6.834

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12097contigH-elongata_contig12097:1388..1910 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12097.1612.1mRNA_H-elongata_contig12097.1612.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12097 1388..1910 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12097.1612.1 ID=prot_H-elongata_contig12097.1612.1|Name=mRNA_H-elongata_contig12097.1612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
LRRLWLFSNRIASMEGLYHCGDLRELLLHDNMISAAADLESLVHLQHLGL
AGNPIGGLRHLSNLRGLPSLMELTLDDIHFGACPVVAVKGYRDFVMCYLR
QVGEREGVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt