prot_H-elongata_contig120927.1609.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig120927.1609.1
Unique Nameprot_H-elongata_contig120927.1609.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: D8LU65_ECTSI (Pre-mRNA-splicing factor 38 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU65_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.480e-22
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 0
Query:    5 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 57
            GWELRTID  IEELL SDISCSIALPRLPKRVALEDSK LKGAR SVLDEDW+
Sbjct:  109 GWELRTIDQQIEELLHSDISCSIALPRLPKRVALEDSKLLKGARVSVLDEDWD 161          
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S0TTJ6_HEMAN (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTJ6_HEMAN)

HSP 1 Score: 55.1 bits (131), Expect = 3.510e-8
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    1 MNLTGWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 57
            M   G+E+R +D  I++LL    +  +A+P LPKR+ALEDS  L G R S+LD+D E
Sbjct:   48 MAWAGFEVRYMDDFIDQLLTEAENVDVAMPVLPKRIALEDSGVLDGPRVSILDQDLE 104          
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S1EF92_HEMAN (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EF92_HEMAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.770e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    1 MNLTGWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 57
            M   G+E+R +D  I++LL    +  +A+P LPKR+ALEDS  L G R S+LD+D E
Sbjct:  157 MAWAGFEVRYMDDFIDQLLTEAENVDVAMPVLPKRIALEDSGVLDGPRVSILDQDLE 213          
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S0LGE6_9EUKA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGE6_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 9.600e-7
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:   11 IDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWEVSI 60
            +D ++EELL+ D +  IALP LPKR+ALE S  +KG R S L+++ E  I
Sbjct:  149 MDELVEELLREDYAFDIALPHLPKRIALEGSGMIKGPRRSALEDEIEAEI 198          
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S2W3S8_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3S8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.700e-6
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    5 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 57
            GWE+  +D  I+ELL SD SC IALPRLPKR  LED+  +   R +  ++D E
Sbjct:  140 GWEIVRVDEFIDELLTSDYSCDIALPRLPKRWHLEDAGMIPP-RMNHAEDDLE 191          
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S2WCH1_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WCH1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.220e-5
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    5 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDED 55
            GW+L  +D +++ELL SDISC IALPRL  R  LE S  L  +R S+L ++
Sbjct:  134 GWDLLCMDELVDELLTSDISCDIALPRLVARNVLEASNML-ASRESLLHQE 183          
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A2R5GI02_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI02_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.390e-5
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0
Query:    5 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVL 52
            GWEL T+D  I+ LL+ D++CSIALPRL  R  L  ++ L   R +VL
Sbjct:  148 GWELTTMDDFIDTLLEEDMACSIALPRLALRSVLVQARLLPPERQTVL 195          
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A2I0WX09_9ASPA (Pre-mRNA-splicing factor 38 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WX09_9ASPA)

HSP 1 Score: 48.9 bits (115), Expect = 4.500e-5
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    6 WELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 57
            + L  +D VI++LL +D SC IALPR+ KR  LE S  L+ AR S L++D+E
Sbjct:  139 YSLTHVDEVIDQLLTTDYSCDIALPRIQKRWTLEASGILE-ARRSALEDDFE 189          
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7I4C3Q0_PHYPA (Pre-mRNA-splicing factor 38 n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4C3Q0_PHYPA)

HSP 1 Score: 48.1 bits (113), Expect = 8.440e-5
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    5 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 57
            G+ L  +D  I+ELL ++ SC IALPR+PKR  LE +  L   R S L++D+E
Sbjct:  138 GYILARVDEFIDELLTTEYSCDIALPRVPKRWTLETTGLL-DQRRSALEDDFE 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LU65_ECTSI1.480e-2288.68Pre-mRNA-splicing factor 38 n=1 Tax=Ectocarpus sil... [more]
A0A7S0TTJ6_HEMAN3.510e-847.37Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hem... [more]
A0A7S1EF92_HEMAN1.770e-747.37Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hem... [more]
A0A7S0LGE6_9EUKA9.600e-750.00Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Coc... [more]
A0A7S2W3S8_9STRA2.700e-650.94Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulin... [more]
A0A7S2WCH1_9STRA1.220e-550.98Pre-mRNA-splicing factor 38 n=1 Tax=labyrinthulid ... [more]
A0A2R5GI02_9STRA2.390e-550.00Pre-mRNA-splicing factor 38 n=1 Tax=Hondaea fermen... [more]
A0A2I0WX09_9ASPA4.500e-550.00Pre-mRNA-splicing factor 38 n=1 Tax=Dendrobium cat... [more]
A0A7I4C3Q0_PHYPA8.440e-547.17Pre-mRNA-splicing factor 38 n=3 Tax=Physcomitrium ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 5..41
e-value: 2.0E-5
score: 24.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120927contigH-elongata_contig120927:1371..1559 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120927.1609.1mRNA_H-elongata_contig120927.1609.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig120927 1371..1559 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig120927.1609.1 ID=prot_H-elongata_contig120927.1609.1|Name=mRNA_H-elongata_contig120927.1609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MNLTGWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARAS
VLDEDWEVSITV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38