mRNA_H-elongata_contig120927.1609.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120927.1609.1
Unique NamemRNA_H-elongata_contig120927.1609.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: D8LU65_ECTSI (Pre-mRNA-splicing factor 38 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU65_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.480e-22
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   13 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 171
            GWELRTID  IEELL SDISCSIALPRLPKRVALEDSK LKGAR SVLDEDW+
Sbjct:  109 GWELRTIDQQIEELLHSDISCSIALPRLPKRVALEDSKLLKGARVSVLDEDWD 161
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S0TTJ6_HEMAN (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTJ6_HEMAN)

HSP 1 Score: 55.1 bits (131), Expect = 3.510e-8
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 MNLTGWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 171
            M   G+E+R +D  I++LL    +  +A+P LPKR+ALEDS  L G R S+LD+D E
Sbjct:   48 MAWAGFEVRYMDDFIDQLLTEAENVDVAMPVLPKRIALEDSGVLDGPRVSILDQDLE 104
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S1EF92_HEMAN (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EF92_HEMAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.770e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 MNLTGWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 171
            M   G+E+R +D  I++LL    +  +A+P LPKR+ALEDS  L G R S+LD+D E
Sbjct:  157 MAWAGFEVRYMDDFIDQLLTEAENVDVAMPVLPKRIALEDSGVLDGPRVSILDQDLE 213
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S0LGE6_9EUKA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGE6_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 9.600e-7
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   31 IDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWEVSI 180
            +D ++EELL+ D +  IALP LPKR+ALE S  +KG R S L+++ E  I
Sbjct:  149 MDELVEELLREDYAFDIALPHLPKRIALEGSGMIKGPRRSALEDEIEAEI 198
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S2W3S8_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3S8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.700e-6
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   13 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 171
            GWE+  +D  I+ELL SD SC IALPRLPKR  LED+  +   R +  ++D E
Sbjct:  140 GWEIVRVDEFIDELLTSDYSCDIALPRLPKRWHLEDAGMIPP-RMNHAEDDLE 191
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7S2WCH1_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WCH1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.220e-5
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   13 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDED 165
            GW+L  +D +++ELL SDISC IALPRL  R  LE S  L  +R S+L ++
Sbjct:  134 GWDLLCMDELVDELLTSDISCDIALPRLVARNVLEASNML-ASRESLLHQE 183
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A2R5GI02_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI02_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.390e-5
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   13 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVL 156
            GWEL T+D  I+ LL+ D++CSIALPRL  R  L  ++ L   R +VL
Sbjct:  148 GWELTTMDDFIDTLLEEDMACSIALPRLALRSVLVQARLLPPERQTVL 195
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A2I0WX09_9ASPA (Pre-mRNA-splicing factor 38 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WX09_9ASPA)

HSP 1 Score: 48.9 bits (115), Expect = 4.500e-5
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   16 WELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 171
            + L  +D VI++LL +D SC IALPR+ KR  LE S  L+ AR S L++D+E
Sbjct:  139 YSLTHVDEVIDQLLTTDYSCDIALPRIQKRWTLEASGILE-ARRSALEDDFE 189
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BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Match: A0A7I4C3Q0_PHYPA (Pre-mRNA-splicing factor 38 n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4C3Q0_PHYPA)

HSP 1 Score: 48.1 bits (113), Expect = 8.440e-5
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   13 GWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARASVLDEDWE 171
            G+ L  +D  I+ELL ++ SC IALPR+PKR  LE +  L   R S L++D+E
Sbjct:  138 GYILARVDEFIDELLTTEYSCDIALPRVPKRWTLETTGLL-DQRRSALEDDFE 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120927.1609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LU65_ECTSI1.480e-2288.68Pre-mRNA-splicing factor 38 n=1 Tax=Ectocarpus sil... [more]
A0A7S0TTJ6_HEMAN3.510e-847.37Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hem... [more]
A0A7S1EF92_HEMAN1.770e-747.37Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hem... [more]
A0A7S0LGE6_9EUKA9.600e-750.00Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Coc... [more]
A0A7S2W3S8_9STRA2.700e-650.94Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulin... [more]
A0A7S2WCH1_9STRA1.220e-550.98Pre-mRNA-splicing factor 38 n=1 Tax=labyrinthulid ... [more]
A0A2R5GI02_9STRA2.390e-550.00Pre-mRNA-splicing factor 38 n=1 Tax=Hondaea fermen... [more]
A0A2I0WX09_9ASPA4.500e-550.00Pre-mRNA-splicing factor 38 n=1 Tax=Dendrobium cat... [more]
A0A7I4C3Q0_PHYPA8.440e-547.17Pre-mRNA-splicing factor 38 n=3 Tax=Physcomitrium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120927contigH-elongata_contig120927:1371..1559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue3.2e-18
Seed eggNOG ortholog2880.D8LU65
Preferred namePRPF38A
KEGG koko:K12849,ko:K12851
KEGG Pathwayko03040,map03040
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0030532,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071011,GO:0071704,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2889@1,KOG2889@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPre-mRNA-splicing factor 38
Ec32 orthologEc-16_000410.1
Exons1
Model size189
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.8382144-CDS-H-elongata_contig120927:1370..15591622929710.8382144-CDS-H-elongata_contig120927:1370..1559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120927 1371..1559 +
1691679128.2047143-CDS-H-elongata_contig120927:1370..15591691679128.2047143-CDS-H-elongata_contig120927:1370..1559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120927 1371..1559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120927.1609.1prot_H-elongata_contig120927.1609.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120927 1371..1559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120927.1609.1

>prot_H-elongata_contig120927.1609.1 ID=prot_H-elongata_contig120927.1609.1|Name=mRNA_H-elongata_contig120927.1609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MNLTGWELRTIDMVIEELLQSDISCSIALPRLPKRVALEDSKFLKGARAS
VLDEDWEVSITV*
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mRNA from alignment at H-elongata_contig120927:1371..1559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120927.1609.1 ID=mRNA_H-elongata_contig120927.1609.1|Name=mRNA_H-elongata_contig120927.1609.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig120927:1371..1559+ (Himanthalia elongata Himel1 dioecious)
ATGAACCTGACAGGGTGGGAACTCCGCACGATCGACATGGTGATTGAGGA
GCTCCTGCAGTCGGACATCAGCTGCAGCATCGCCTTGCCACGGCTTCCCA
AGAGGGTCGCCCTCGAAGACTCCAAGTTCCTCAAGGGGGCGAGAGCTAGC
GTGTTGGACGAGGACTGGGAAGTGAGTATTACAGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig120927:1371..1559+

>mRNA_H-elongata_contig120927.1609.1 ID=mRNA_H-elongata_contig120927.1609.1|Name=mRNA_H-elongata_contig120927.1609.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig120927:1371..1559+ (Himanthalia elongata Himel1 dioecious)
ATGAACCTGACAGGGTGGGAACTCCGCACGATCGACATGGTGATTGAGGA
GCTCCTGCAGTCGGACATCAGCTGCAGCATCGCCTTGCCACGGCTTCCCA
AGAGGGTCGCCCTCGAAGACTCCAAGTTCCTCAAGGGGGCGAGAGCTAGC
GTGTTGGACGAGGACTGGGAAGTGAGTATTACAGTATGAATGAACCTGAC
AGGGTGGGAACTCCGCACGATCGACATGGTGATTGAGGAGCTCCTGCAGT
CGGACATCAGCTGCAGCATCGCCTTGCCACGGCTTCCCAAGAGGGTCGCC
CTCGAAGACTCCAAGTTCCTCAAGGGGGCGAGAGCTAGCGTGTTGGACGA
GGACTGGGAAGTGAGTATTACAGTATGA
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