prot_H-elongata_contig12072.1594.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12072.1594.1
Unique Nameprot_H-elongata_contig12072.1594.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length408
Homology
BLAST of mRNA_H-elongata_contig12072.1594.1 vs. uniprot
Match: A0A6H5KNU9_9PHAE (CRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU9_9PHAE)

HSP 1 Score: 469 bits (1208), Expect = 1.010e-160
Identity = 274/417 (65.71%), Postives = 314/417 (75.30%), Query Frame = 0
Query:    1 MKKVSTGERIKIADLRRRSVGRPRGDADSDVV-SEQRLVSELMDTSPSSSYEREALEEVLAYNAHDALVSNSPLPRYESDGEAANEVVTGTQDGVSKTDLIVKEDVPEIPGETQQGSLLAAELAAVKISAPQPSQ---TASVRQRDDTQ--SDGESLMGDPRLDHGA----GGCSAEQLIRSLISECKALELGSDLIEATDKYVLRMADEDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAKVKPMLHVTIALHKDLNGPLTGTKAMEAPGAGATMTLEVNFQIPEQEETHHMNIRIAPDSSQKDLMHSRDSGSRSGAASAAVSEVEEIIRVESDGNEKQPXXXXXXXXXXXXXXGHDEMVEKTGGEEKHPIQEPAAEKETVKLRNMDTGEDIELGEIDERVPPSVDPGELF-AKDV 406
            MKKVSTGERIK ADLRRRSVG  R DADSD   SEQR VSELMDT+PSSSYE E L +  AYN  D  VSNSPL RYESDGEAA+EVVT TQ+G+ K DLIVKEDVPEIP ETQQGSLLAA LAAV+I A Q       A  RQRDDT   SDGESLMGDPR+DHG     GGC+AEQLIR+L+SECK+ +LGS+L +  DKYVLRMAD+DWDPDLDFPGLDSSAVITDVGVDQFVLCHQA+++PMLH+TIALHK LNGPLTGT AMEAPGAGA++TLEV+FQ P QE THHM++ IA +S Q+DL+  RDSG R  AASA  +EVE+++R    GN++Q                   +VE+ G EE             VK+RNMDTGEDI L EI +RVPPS+DPGE+F +KDV
Sbjct:   93 MKKVSTGERIKFADLRRRSVGVSR-DADSDAAQSEQRFVSELMDTTPSSSYEGETLGDGYAYNPPDPSVSNSPLARYESDGEAADEVVTDTQEGIGKADLIVKEDVPEIPEETQQGSLLAAGLAAVQIGASQSGLGGLLAGARQRDDTMTLSDGESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASITLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRT-PPGNKEQ-------------------VVEEIGIEE------------AVKVRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDV 476          
BLAST of mRNA_H-elongata_contig12072.1594.1 vs. uniprot
Match: D7FJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ13_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 8.990e-72
Identity = 128/211 (60.66%), Postives = 150/211 (71.09%), Query Frame = 0
Query:  197 MADEDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAKVKPMLHVTIALHKDLNGPLTGTKAMEAPGAGATMTLEVNFQIPEQEETHHMNIRIAPDSSQKDLMHSRDSGSRSGAASAAVSEVEEIIRVESDGNEKQPXXXXXXXXXXXXXXGHDEMVEKTGGEEKHPIQEPAAEKETVKLRNMDTGEDIELGEIDERVPPSVDPGELF-AKDV 406
            MAD+DWDPDLDFPGLDSSAVITDVGVDQFVLCHQA+++PMLH+TIALHK LNGPLTGT AMEAPGAGA+MTLEV+FQ P QE THHM++ IA +S Q+DL+  RDSG R  AASA  +EVE+++R      EK                    +V + G EE             VKLRNMDTGEDI L EI +RVPPS+DPGE+F +KDV
Sbjct:    1 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPSNKEK--------------------VVGEIGMEE------------AVKLRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDV 179          
BLAST of mRNA_H-elongata_contig12072.1594.1 vs. uniprot
Match: A0A835ZDT3_9STRA (CRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.040e-28
Identity = 125/433 (28.87%), Postives = 188/433 (43.42%), Query Frame = 0
Query:    1 MKKVSTGERIKIADLRRRSVGRPRGDADSDVVSEQRLVSELMDTSPSSSYEREALEEVLAYNAHDALVSNSPLPRYESDGEAANEVVTGTQ--DGVSKTDLIVKEDVPEIPG--ETQQGSLLAAELAAVKI---------SAPQPSQTASVRQRDDTQSDG------------ESLMGDPRLDHGAGGCSAEQLIRSLISECKALELGSDLIEATDK-YVLRMADEDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAKVKPMLHVTIALHKDLNGPLTGTKAMEAPGAGATMTLEVNFQIPEQEETHH---MNIRIAPDSSQKDLMHSRDSGSRSGAASAAVSEVEEIIRVESDGNEKQPXXXXXXXXXXXXXXGHDEMVEKTGGEEKHPIQEPAAEKETVKLRNMDTGEDIELGEIDERVPPSVDPGELFAK 404
            MKK+STGER+ + D+RR          D+ +  EQ LV ELMDT+PSSS+  +A  +   Y+      +    P+  SD + A  VV+G+   +G    DL  K +V ++P   ++   SLL+  LAAVK          SA      AS+ +   ++S+             E+ M D       GGCSA QLI +++ EC+A ++   L       + LR+AD D  PDLDFP LDS+A I DVGVD+FVLC      P+L V             G         G ++ L+V+   P +E+      + I + PD        +  +  R+ + ++ +S          +G    P                                         ++RN+DTGE+I +G+ D  VPP V P  LF +
Sbjct:    1 MKKISTGERVNLQDIRRGIDQLRLSHTDAAIAGEQMLVEELMDTTPSSSFGEDAWRDGYIYDG----AAGGASPKDYSDDDGAEAVVSGSYPPEGQESQDLFEKVEVAKLPDSQDSNPTSLLSGALAAVKSQEQQGPGIGSAGWSPLMASIMESGLSRSESXXXXXXXXXXXEEADMAD------TGGCSARQLISAVLKECQASDIAPILHNRPPHDFDLRIAD-DGQPDLDFPELDSAAAIIDVGVDEFVLCEAGGAVPLLVVEXXXXXXXXXXXKG---------GYSLVLQVSLFEPGREDQRRSMCLPIELLPDPLWYGASTTLQTRRRTSSRTSGIS---------GEGGSNDPSAL-------------------------------------TRIRNIDTGEEINVGDYDSMVPPGVSPQRLFGR 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12072.1594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNU9_9PHAE1.010e-16065.71CRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJ13_ECTSI8.990e-7260.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDT3_9STRA5.040e-2828.87CRIM domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031567Sin1, middle CRIM domainPFAMPF16978CRIMcoord: 189..231
e-value: 1.1E-6
score: 28.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12072contigH-elongata_contig12072:2811..5802 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12072.1594.1mRNA_H-elongata_contig12072.1594.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12072 2016..7002 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12072.1594.1 ID=prot_H-elongata_contig12072.1594.1|Name=mRNA_H-elongata_contig12072.1594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=408bp
MKKVSTGERIKIADLRRRSVGRPRGDADSDVVSEQRLVSELMDTSPSSSY
EREALEEVLAYNAHDALVSNSPLPRYESDGEAANEVVTGTQDGVSKTDLI
VKEDVPEIPGETQQGSLLAAELAAVKISAPQPSQTASVRQRDDTQSDGES
LMGDPRLDHGAGGCSAEQLIRSLISECKALELGSDLIEATDKYVLRMADE
DWDPDLDFPGLDSSAVITDVGVDQFVLCHQAKVKPMLHVTIALHKDLNGP
LTGTKAMEAPGAGATMTLEVNFQIPEQEETHHMNIRIAPDSSQKDLMHSR
DSGSRSGAASAAVSEVEEIIRVESDGNEKQPEIIRVESDGNEKQPGHDEM
VEKTGGEEKHPIQEPAAEKETVKLRNMDTGEDIELGEIDERVPPSVDPGE
LFAKDVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031567CRIM_dom