prot_H-elongata_contig12071.1590.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12071.1590.1
Unique Nameprot_H-elongata_contig12071.1590.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length86
Homology
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.630e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 0
Query:   10 GEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGGKE 86
            G G  C  P F +E M++PR SLV SPGY FVSADYSQ+EMRLMAHLSGDPDLL VFADGGDVF  IAA L+G GK+
Sbjct:  199 GLGARC--PWFAKEAMIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKK 273          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.740e-24
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 0
Query:   10 GEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGGKE 86
            G G  C  P F +E M++PR SLV SPGY FVSADYSQ+EMRLMAHLSGDPDLL VFADGGDVF  IAA L+G G +
Sbjct: 1999 GLGARC--PWFAKEAMMKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGNK 2073          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A3M1Q899_9BACT (DNA polymerase I n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M1Q899_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 1.570e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 0
Query:   27 RPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQG 82
            R R + VP PG+VFVSADYSQ+E+R++AHLSGDP+L+  F +G D+    AAT+ G
Sbjct:  757 RIREAFVPEPGWVFVSADYSQMELRILAHLSGDPELIRAFREGRDIHAWTAATVTG 812          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A7S3XVL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVL9_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 2.280e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0
Query:   28 PRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQG 82
            PR   + +PG++ ++ADYSQ+EMRLMAH S DP L  +F  GGDVF GIA+  +G
Sbjct:   19 PRDFFMAAPGHILIAADYSQVEMRLMAHFSRDPGLQALFKSGGDVFRGIASRWRG 73          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A562BVI5_9BURK (DNA polymerase I n=13 Tax=Cupriavidus TaxID=106589 RepID=A0A562BVI5_9BURK)

HSP 1 Score: 67.4 bits (163), Expect = 3.550e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0
Query:   27 RPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGGKE 86
            R R + + SPG+V VSADYSQIE+R+MAH+SGD +LLG FA G D+    AA + G G +
Sbjct:  699 RIREAFIASPGHVIVSADYSQIELRIMAHISGDENLLGAFARGEDIHRATAAEIFGVGTD 758          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A1B4VC26_9GAMM (DNA polymerase I n=1 Tax=Sulfurifustis variabilis TaxID=1675686 RepID=A0A1B4VC26_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 9.040e-11
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0
Query:   27 RPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQG 82
            R R + VP PGY  VSADYSQIE+R+MAHLSGDP L+  FA G D+    AA + G
Sbjct:  684 RIRQAFVPEPGYRIVSADYSQIELRIMAHLSGDPGLIQAFAAGQDIHRATAAEVFG 739          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: UPI000C75EE03 (uncharacterized protein LOC111703457 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75EE03)

HSP 1 Score: 66.2 bits (160), Expect = 9.160e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:   29 RGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAA 78
            R + VP+PGY+ VSADY QIE+R++AHLSGDP L+     GGD+F  +AA
Sbjct: 1190 RKAFVPNPGYILVSADYEQIELRILAHLSGDPILIKAIRTGGDIFMELAA 1239          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A1G0KUZ5_9GAMM (DNA polymerase I n=1 Tax=Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 TaxID=1798308 RepID=A0A1G0KUZ5_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 1.230e-10
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   18 PVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGG 84
            PV  EE   R R + VP PGY  V+ADYSQIE+R+MAHLSGD +LL  FA G D+    AA +  GG
Sbjct:  648 PVRSEEGR-RIRQAFVPEPGYRMVAADYSQIELRIMAHLSGDQNLLKAFASGADIHRATAAEVFTGG 713          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: H8Z179_9GAMM (DNA polymerase I n=1 Tax=Thiorhodovibrio sp. 970 TaxID=631362 RepID=H8Z179_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 1.230e-10
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 0
Query:    2 LAARRSAAGEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQG 82
            +AA    +   P   N     E   R R + +P PGY  V+ADYSQIE+R+MAHLSGD  LL  FA G DV    AA + G
Sbjct:  640 VAATGRLSSSDPNLQNIPIRREEGRRIRRAFIPEPGYRLVAADYSQIELRIMAHLSGDQRLLAAFAAGADVHRATAAEIHG 720          
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: UPI0010A2E0D4 (LOW QUALITY PROTEIN: DNA polymerase nu-like n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A2E0D4)

HSP 1 Score: 65.5 bits (158), Expect = 1.690e-10
Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    1 MLAARRSAAGEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFAD-GGDVFCGIAATLQG 82
            M++ ++   G+G         E V + PR   +P PG+ F+SAD+ Q+E+RL+AHLS DP+LL +F+D   D+F  +A+  +G
Sbjct:  682 MISKKQYVQGKG--------AELVTVHPRAMFIPRPGWTFLSADFCQVELRLLAHLSSDPELLRIFSDPSADIFSMLASKWKG 756          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM14_ECTSI4.630e-2571.43DNA polymerase I (POL I) n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L306_9PHAE3.740e-2470.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M1Q899_9BACT1.570e-1257.14DNA polymerase I n=1 Tax=Acidobacteria bacterium T... [more]
A0A7S3XVL9_HETAK2.280e-1154.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A562BVI5_9BURK3.550e-1155.00DNA polymerase I n=13 Tax=Cupriavidus TaxID=106589... [more]
A0A1B4VC26_9GAMM9.040e-1158.93DNA polymerase I n=1 Tax=Sulfurifustis variabilis ... [more]
UPI000C75EE039.160e-1158.00uncharacterized protein LOC111703457 n=1 Tax=Euryt... [more]
A0A1G0KUZ5_9GAMM1.230e-1055.22DNA polymerase I n=1 Tax=Gammaproteobacteria bacte... [more]
H8Z179_9GAMM1.230e-1045.68DNA polymerase I n=1 Tax=Thiorhodovibrio sp. 970 T... [more]
UPI0010A2E0D41.690e-1038.55LOW QUALITY PROTEIN: DNA polymerase nu-like n=2 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.370coord: 27..47
e-value: 8.0E-16
score: 60.0
NoneNo IPR availableGENE3D1.10.150.20coord: 48..81
e-value: 8.0E-16
score: 60.0
NoneNo IPR availablePANTHERPTHR10133:SF27DNA POLYMERASE THETAcoord: 28..82
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 17..81
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 27..82
e-value: 2.6E-15
score: 56.4
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 28..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12071contigH-elongata_contig12071:930..1752 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12071.1590.1mRNA_H-elongata_contig12071.1590.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12071 916..1752 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12071.1590.1 ID=prot_H-elongata_contig12071.1590.1|Name=mRNA_H-elongata_contig12071.1590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MLAARRSAAGEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEM
RLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGGKE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR002298DNA_polymerase_A