mRNA_H-elongata_contig12071.1590.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12071.1590.1
Unique NamemRNA_H-elongata_contig12071.1590.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.430e-25
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 3 
Query:   42 GEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGGKE 272
            G G  C  P F +E M++PR SLV SPGY FVSADYSQ+EMRLMAHLSGDPDLL VFADGGDVF  IAA L+G GK+
Sbjct:  199 GLGARC--PWFAKEAMIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKK 273
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.370e-24
Identity = 58/90 (64.44%), Postives = 65/90 (72.22%), Query Frame = 3 
Query:    3 KSEAMLAARRSAAGEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGGKE 272
            K+EAM        G G  C  P F +E M++PR SLV SPGY FVSADYSQ+EMRLMAHLSGDPDLL VFADGGDVF  IAA L+G G +
Sbjct: 1991 KAEAM-----KEGGLGARC--PWFAKEAMMKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGNK 2073
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A3M1Q899_9BACT (DNA polymerase I n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M1Q899_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 1.840e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:   93 RPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQG 260
            R R + VP PG+VFVSADYSQ+E+R++AHLSGDP+L+  F +G D+    AAT+ G
Sbjct:  757 RIREAFVPEPGWVFVSADYSQMELRILAHLSGDPELIRAFREGRDIHAWTAATVTG 812
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A7S3XVL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVL9_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 2.650e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 3 
Query:   96 PRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQG 260
            PR   + +PG++ ++ADYSQ+EMRLMAH S DP L  +F  GGDVF GIA+  +G
Sbjct:   19 PRDFFMAAPGHILIAADYSQVEMRLMAHFSRDPGLQALFKSGGDVFRGIASRWRG 73
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A562BVI5_9BURK (DNA polymerase I n=13 Tax=Cupriavidus TaxID=106589 RepID=A0A562BVI5_9BURK)

HSP 1 Score: 67.4 bits (163), Expect = 4.150e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:   93 RPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGGKE 272
            R R + + SPG+V VSADYSQIE+R+MAH+SGD +LLG FA G D+    AA + G G +
Sbjct:  699 RIREAFIASPGHVIVSADYSQIELRIMAHISGDENLLGAFARGEDIHRATAAEIFGVGTD 758
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A1G0KUZ5_9GAMM (DNA polymerase I n=1 Tax=Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 TaxID=1798308 RepID=A0A1G0KUZ5_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 1.050e-10
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 3 
Query:    9 EAMLAARRSAAGEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGG 266
            +A+ A  R ++ +  +   PV  EE   R R + VP PGY  V+ADYSQIE+R+MAHLSGD +LL  FA G D+    AA +  GG
Sbjct:  629 QAVAATGRLSSSDPNLQNIPVRSEEGR-RIRQAFVPEPGYRMVAADYSQIELRIMAHLSGDQNLLKAFASGADIHRATAAEVFTGG 713
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: A0A1B4VC26_9GAMM (DNA polymerase I n=1 Tax=Sulfurifustis variabilis TaxID=1675686 RepID=A0A1B4VC26_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 1.060e-10
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 3 
Query:   93 RPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQG 260
            R R + VP PGY  VSADYSQIE+R+MAHLSGDP L+  FA G D+    AA + G
Sbjct:  684 RIRQAFVPEPGYRIVSADYSQIELRIMAHLSGDPGLIQAFAAGQDIHRATAAEVFG 739
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: UPI000C75EE03 (uncharacterized protein LOC111703457 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75EE03)

HSP 1 Score: 66.2 bits (160), Expect = 1.070e-10
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 3 
Query:   99 RGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAA 248
            R + VP+PGY+ VSADY QIE+R++AHLSGDP L+     GGD+F  +AA
Sbjct: 1190 RKAFVPNPGYILVSADYEQIELRILAHLSGDPILIKAIRTGGDIFMELAA 1239
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: H8Z179_9GAMM (DNA polymerase I n=1 Tax=Thiorhodovibrio sp. 970 TaxID=631362 RepID=H8Z179_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 1.970e-10
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 3 
Query:   93 RPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFADGGDVFCGIAATLQG 260
            R R + +P PGY  V+ADYSQIE+R+MAHLSGD  LL  FA G DV    AA + G
Sbjct:  665 RIRRAFIPEPGYRLVAADYSQIELRIMAHLSGDQRLLAAFAAGADVHRATAAEIHG 720
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BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Match: UPI0010A2E0D4 (LOW QUALITY PROTEIN: DNA polymerase nu-like n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A2E0D4)

HSP 1 Score: 65.1 bits (157), Expect = 2.700e-10
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:   78 EEVMLRPRGSLVPSPGYVFVSADYSQIEMRLMAHLSGDPDLLGVFAD-GGDVFCGIAATLQG 260
            E V + PR   +P PG+ F+SAD+ Q+E+RL+AHLS DP+LL +F+D   D+F  +A+  +G
Sbjct:  695 ELVTVHPRAMFIPRPGWTFLSADFCQVELRLLAHLSSDPELLRIFSDPSADIFSMLASKWKG 756
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12071.1590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM14_ECTSI5.430e-2571.43DNA polymerase I (POL I) n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L306_9PHAE2.370e-2464.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M1Q899_9BACT1.840e-1257.14DNA polymerase I n=1 Tax=Acidobacteria bacterium T... [more]
A0A7S3XVL9_HETAK2.650e-1154.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A562BVI5_9BURK4.150e-1155.00DNA polymerase I n=13 Tax=Cupriavidus TaxID=106589... [more]
A0A1G0KUZ5_9GAMM1.050e-1046.51DNA polymerase I n=1 Tax=Gammaproteobacteria bacte... [more]
A0A1B4VC26_9GAMM1.060e-1058.93DNA polymerase I n=1 Tax=Sulfurifustis variabilis ... [more]
UPI000C75EE031.070e-1058.00uncharacterized protein LOC111703457 n=1 Tax=Euryt... [more]
H8Z179_9GAMM1.970e-1057.14DNA polymerase I n=1 Tax=Thiorhodovibrio sp. 970 T... [more]
UPI0010A2E0D42.700e-1046.77LOW QUALITY PROTEIN: DNA polymerase nu-like n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12071contigH-elongata_contig12071:916..1752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D7FM14
Preferred namePOLQ
KEGG koko:K02349
GOsGO:0000018,GO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003824,GO:0003887,GO:0004386,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006284,GO:0006289,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009791,GO:0009888,GO:0009892,GO:0009933,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0016043,GO:0016445,GO:0016446,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0036297,GO:0042623,GO:0042802,GO:0043142,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045738,GO:0045910,GO:0045934,GO:0046483,GO:0048507,GO:0048519,GO:0048523,GO:0048532,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051239,GO:0051259,GO:0051260,GO:0051301,GO:0051575,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0097681,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1902749,GO:1990067,GO:2000011,GO:2000026,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12071.1590.1prot_H-elongata_contig12071.1590.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12071 930..1752 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.6442676-UTR-H-elongata_contig12071:915..9291622929708.6442676-UTR-H-elongata_contig12071:915..929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 916..929 +
1691679127.384193-UTR-H-elongata_contig12071:915..9291691679127.384193-UTR-H-elongata_contig12071:915..929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12071 916..929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.6609285-CDS-H-elongata_contig12071:929..10701622929708.6609285-CDS-H-elongata_contig12071:929..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 930..1070 +
1691679127.3972647-CDS-H-elongata_contig12071:929..10701691679127.3972647-CDS-H-elongata_contig12071:929..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 930..1070 +
1622929708.6791277-CDS-H-elongata_contig12071:1635..17521622929708.6791277-CDS-H-elongata_contig12071:1635..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 1636..1752 +
1691679127.4074717-CDS-H-elongata_contig12071:1635..17521691679127.4074717-CDS-H-elongata_contig12071:1635..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12071 1636..1752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12071.1590.1

>prot_H-elongata_contig12071.1590.1 ID=prot_H-elongata_contig12071.1590.1|Name=mRNA_H-elongata_contig12071.1590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MLAARRSAAGEGPVCLNPVFGEEVMLRPRGSLVPSPGYVFVSADYSQIEM
RLMAHLSGDPDLLGVFADGGDVFCGIAATLQGGGKE
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mRNA from alignment at H-elongata_contig12071:916..1752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12071.1590.1 ID=mRNA_H-elongata_contig12071.1590.1|Name=mRNA_H-elongata_contig12071.1590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at H-elongata_contig12071:916..1752+ (Himanthalia elongata Himel1 dioecious)
CCAAGTCCGAGGCCATGCTAGCAGCGCGGCGGTCGGCTGCCGGTGAAGGG
CCCGTGTGTCTTAACCCCGTGTTCGGGGAGGAGGTCATGCTGAGGCCCCG
GGGTTCCCTCGTGCCGTCCCCGGGTTATGTCTTTGTGTCTGCTGACTATT
CGCAGGTGACTTGCTATAGTACAGAGACTTGTTTTTCGACGTTGGTAATA
TTTCGTATGGACGTGTAAGTATAAGTATTAGTACTGTTTCAAATAAAAAA
AACAGGTGCGTAAATATTTAATACATCTTACGTATTTATGTTACTATGTG
AATGTGTGTGAGATATATAACAATAGGGAGAGGGCATATGCACCCGTTGA
AGTATGGGGCTGTTCCAGTCTTGTATAGAGGTGTGTATAACTATGAATGG
TTGTCTACGTACGTGTGTGTCTGTGTGTGTGCGCGTGGAGTCGTTTACTC
CCGTATCCGAGTGCGCCATCGTCGACTGATCATGTCATGTGGCGCGCGCG
TCCACCCCGACAGTCGTCTTTCTGTGCAAGAAGCGCACGTACGGTTACTG
TCCGGAATTGTTTTATACGCTTCGGGCTTGAGCACGACGGAGGCGGTCGC
GGAAGCTGTTTTTTTCTTTTTGTGTACCACTCGTTTCGATACAATCCCCG
ATGAGATCACGATCGATCCGTGACGATCTGTGTTAACATCTCGACGGACT
ATGCGTCACCCGCGCAACAGATAGAGATGCGGCTGATGGCGCACCTTTCG
GGGGATCCAGACCTTCTCGGAGTGTTTGCCGACGGCGGGGACGTGTTTTG
CGGGATAGCGGCCACCCTGCAAGGCGGAGGCAAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig12071:916..1752+

>mRNA_H-elongata_contig12071.1590.1 ID=mRNA_H-elongata_contig12071.1590.1|Name=mRNA_H-elongata_contig12071.1590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig12071:916..1752+ (Himanthalia elongata Himel1 dioecious)
ATGCTAGCAGCGCGGCGGTCGGCTGCCGGTGAAGGGCCCGTGTGTCTTAA
CCCCGTGTTCGGGGAGGAGGTCATGCTGAGGCCCCGGGGTTCCCTCGTGC
CGTCCCCGGGTTATGTCTTTGTGTCTGCTGACTATTCGCAGATGCTAGCA
GCGCGGCGGTCGGCTGCCGGTGAAGGGCCCGTGTGTCTTAACCCCGTGTT
CGGGGAGGAGGTCATGCTGAGGCCCCGGGGTTCCCTCGTGCCGTCCCCGG
GTTATGTCTTTGTGTCTGCTGACTATTCGCAGATAGAGATGCGGCTGATG
GCGCACCTTTCGGGGGATCCAGACCTTCTCGGAGTGTTTGCCGACGGCGG
GGACGTGTTTTGCGGGATAGCGGCCACCCTGCAAGGCGGAGGCAAGGAGA
TAGAGATGCGGCTGATGGCGCACCTTTCGGGGGATCCAGACCTTCTCGGA
GTGTTTGCCGACGGCGGGGACGTGTTTTGCGGGATAGCGGCCACCCTGCA
AGGCGGAGGCAAGGAG
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