prot_H-elongata_contig120544.1576.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig120544.1576.1
Unique Nameprot_H-elongata_contig120544.1576.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length142
Homology
BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 7.590e-56
Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 0
Query:    1 MAVSTLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQVLGLAARVIRVIVTLPIMLSGTWVILQNIPQLLPRGVDLKGAGALAALLATPEVLEAAVIVAFLGGTMLWAINFAATTVEAM 131
            MA STLASL LAAE  W+L G PLTLSNAVPTLTKLLP TGIGVFGAAQ++GL ARV+RVIVTLP+M+SGTWVILQN P+L P+G+DL GAG+LAALLATPEVLEAA ++A LGGT +WA+NFA   V A+
Sbjct:  203 MAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGAL 333          
BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 7.930e-32
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 0
Query:    1 MAVSTLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQVLGLAARVIRVIVTLPIMLSGTWVILQNIPQ 80
            MA STLASL+LAAE  W+L G PLTLSNAVPTLTKLLP TGIGVFGAAQ++GL ARV+RVIVTLP+M+SGTWVILQN P+
Sbjct:  204 MAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283          
BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.100e-17
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0
Query:    5 TLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQVLGLAARVIRVIVTLPIMLSGTWVILQNIPQLLPRGVDLKGAGALAALLATPEVLEAAVIVAFLGGTMLWAINFAATTVEAMA--RRRDGSD 139
            T+AS++LA +   +L+  P+TL     TL  LLP    GV GAA+++ +  R++RV+VT+P++L G ++   +IP LL    DL   G L A+LATPEVLEA  ++A + G  +W +   A  V  MA  R  DG D
Sbjct:   42 TVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDL-ATGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDD 173          
BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.230e-12
Identity = 37/122 (30.33%), Postives = 68/122 (55.74%), Query Frame = 0
Query:   12 AAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQVLGLAARVIRVIVTLPIMLSGTWVILQNIPQLLPRGVDLKGAGALAALLATPEVLEAAVIVAFLGGTMLWAINFAATTVEAMAR 133
            A    ++L   P TLSN   T+T +LPA   G FG  +++G   R++R+++++PI++ GTW +   +P+ +    DL     L  + A PE++EA +++ F+G  + W        VE++ +
Sbjct:  149 AGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLASTSLLG-IFAVPEIVEAIILILFVGSFLFWLTQQFLKLVESLTK 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGI5_9PHAE7.590e-5674.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX7_ECTSI7.930e-3280.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM52_9STRA2.100e-1740.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4B2_9STRA1.230e-1230.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..125
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..59
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..78
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..105
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 126..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..55
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availableTMHMMTMhelixcoord: 61..83
NoneNo IPR availableTMHMMTMhelixcoord: 103..125
NoneNo IPR availableTMHMMTMhelixcoord: 32..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120544contigH-elongata_contig120544:1066..1827 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120544.1576.1mRNA_H-elongata_contig120544.1576.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig120544 935..1893 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig120544.1576.1 ID=prot_H-elongata_contig120544.1576.1|Name=mRNA_H-elongata_contig120544.1576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MAVSTLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQV
LGLAARVIRVIVTLPIMLSGTWVILQNIPQLLPRGVDLKGAGALAALLAT
PEVLEAAVIVAFLGGTMLWAINFAATTVEAMARRRDGSDEG*
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