prot_H-elongata_contig119903.1538.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig119903.1538.1
Unique Nameprot_H-elongata_contig119903.1538.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length111
Homology
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BLAST of mRNA_H-elongata_contig119903.1538.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.050e-34
Identity = 67/125 (53.60%), Postives = 83/125 (66.40%), Query Frame = 0 
Query:    1 MGGA-NAAVLAVGRTVFRITMLGYTLSGLAMFPSVILGAQKGFFTWEMDRCSCL------------------LSGPSTSSYDTLDTCTFGEDMGRVNIGWKSYSIDKLEHTNGCPSATEAYETDP 106
            MGGA NAAV+AVGRT FR+ ++GYTLSGLAMFPSVILG  KG+F WEMDRC+C+                  LSG  T++     +C FG+D  +V+IGWK ++ DKL HT GCP AT  YE +P
Sbjct:    1 MGGAGNAAVVAVGRTFFRVAIVGYTLSGLAMFPSVILGVSKGYFEWEMDRCTCVVEQEAAATTGQPIVSSSSLSGTGTTA-GASSSCVFGQDFAKVSIGWKEFTYDKLVHTVGCPIATAFYEANP 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119903.1538.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHX3_ECTSI1.050e-3453.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..111
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119903contigH-elongata_contig119903:392..724 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119903.1538.1mRNA_H-elongata_contig119903.1538.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig119903 123..724 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig119903.1538.1 ID=prot_H-elongata_contig119903.1538.1|Name=mRNA_H-elongata_contig119903.1538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MGGANAAVLAVGRTVFRITMLGYTLSGLAMFPSVILGAQKGFFTWEMDRC
SCLLSGPSTSSYDTLDTCTFGEDMGRVNIGWKSYSIDKLEHTNGCPSATE
AYETDPDALKG
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