mRNA_H-elongata_contig119903.1538.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119903.1538.1
Unique NamemRNA_H-elongata_contig119903.1538.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119903.1538.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.880e-33
Identity = 67/125 (53.60%), Postives = 83/125 (66.40%), Query Frame = 3 
Query:  270 MGGA-NAAVLAVGRTVFRITMLGYTLSGLAMFPSVILGAQKGFFTWEMDRCSCL------------------LSGPSTSSYDTLDTCTFGEDMGRVNIGWKSYSIDKLEHTNGCPSATEAYETDP 587
            MGGA NAAV+AVGRT FR+ ++GYTLSGLAMFPSVILG  KG+F WEMDRC+C+                  LSG  T++     +C FG+D  +V+IGWK ++ DKL HT GCP AT  YE +P
Sbjct:    1 MGGAGNAAVVAVGRTFFRVAIVGYTLSGLAMFPSVILGVSKGYFEWEMDRCTCVVEQEAAATTGQPIVSSSSLSGTGTTA-GASSSCVFGQDFAKVSIGWKEFTYDKLVHTVGCPIATAFYEANP 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119903.1538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHX3_ECTSI1.880e-3353.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119903contigH-elongata_contig119903:123..724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000830.1
Hectar predicted targeting categorysignal peptide
Exons1
Model size604
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.7665417-UTR-H-elongata_contig119903:122..3911622929702.7665417-UTR-H-elongata_contig119903:122..391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119903 123..391 +
1691679125.0051625-UTR-H-elongata_contig119903:122..3911691679125.0051625-UTR-H-elongata_contig119903:122..391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119903 123..391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.7824898-CDS-H-elongata_contig119903:391..7241622929702.7824898-CDS-H-elongata_contig119903:391..724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119903 392..724 +
1691679125.024508-CDS-H-elongata_contig119903:391..7241691679125.024508-CDS-H-elongata_contig119903:391..724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119903 392..724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119903.1538.1prot_H-elongata_contig119903.1538.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119903 392..724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119903.1538.1

>prot_H-elongata_contig119903.1538.1 ID=prot_H-elongata_contig119903.1538.1|Name=mRNA_H-elongata_contig119903.1538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MGGANAAVLAVGRTVFRITMLGYTLSGLAMFPSVILGAQKGFFTWEMDRC
SCLLSGPSTSSYDTLDTCTFGEDMGRVNIGWKSYSIDKLEHTNGCPSATE
AYETDPDALKG
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mRNA from alignment at H-elongata_contig119903:123..724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119903.1538.1 ID=mRNA_H-elongata_contig119903.1538.1|Name=mRNA_H-elongata_contig119903.1538.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=602bp|location=Sequence derived from alignment at H-elongata_contig119903:123..724+ (Himanthalia elongata Himel1 dioecious)
CACACCCATCATCATTTCCTGCTTACCCGTGGACTATATAGTAGCTGTGC
TGGCTGAGCTTGTACTTCCCTTGAGCGACACTCTGTAAAATAATAGAGCG
GACTTTTCGACAGAGCTACTTTTTCCCCAGCACTGCTGCTCAGCTTACCC
GATTGGAAACCTAAGCGTTTCTCCCCCTGGGCGGGAAAGTTTTTTCGAGG
GTGTGTTTAGATCGAAGTTAGTTATCCACAGCATATCGTCGGCATCTAGA
GTGTGGGTGGACGCGAACGATGGGAGGAGCGAACGCCGCAGTTCTGGCTG
TGGGCCGGACGGTTTTTCGGATCACAATGCTGGGCTATACGCTGTCAGGC
CTTGCCATGTTCCCGTCTGTGATCCTTGGCGCCCAGAAGGGCTTCTTTAC
TTGGGAGATGGATCGATGCTCGTGTCTACTGTCTGGCCCAAGCACCTCCT
CCTACGACACGCTAGATACGTGTACGTTCGGGGAAGACATGGGCCGGGTG
AATATCGGTTGGAAGAGTTACAGCATCGACAAGCTCGAGCACACCAATGG
GTGCCCTTCGGCCACCGAAGCATACGAGACGGACCCCGATGCTCTCAAAG
GT
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Coding sequence (CDS) from alignment at H-elongata_contig119903:123..724+

>mRNA_H-elongata_contig119903.1538.1 ID=mRNA_H-elongata_contig119903.1538.1|Name=mRNA_H-elongata_contig119903.1538.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig119903:123..724+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGGAGCGAACGCCGCAGTTCTGGCTGTGGGCCGGACGGTTTTTCG
GATCACAATGCTGGGCTATACGCTGTCAGGCCTTGCCATGTTCCCGTCTG
TGATCCTTGGCGCCCAGAAGGGCTTCTTTACTTGGGAGATGGATCGATGC
TCGTGTCTACTGTCTGGCCCAAGCACCTCCTCCTACGACACGCTAGATAC
GTGTACGTTCGGGGAAGACATGGGCCGGGTGAATATCGGTTGGAAGAGTT
ACAGCATCGACAAGCTCGAGCACACCAATGGGTGCCCTTCGGCCACCGAA
GCATACGAGACGGACCCCGATGCTCTCAAAGGTATGGGAGGAGCGAACGC
CGCAGTTCTGGCTGTGGGCCGGACGGTTTTTCGGATCACAATGCTGGGCT
ATACGCTGTCAGGCCTTGCCATGTTCCCGTCTGTGATCCTTGGCGCCCAG
AAGGGCTTCTTTACTTGGGAGATGGATCGATGCTCGTGTCTACTGTCTGG
CCCAAGCACCTCCTCCTACGACACGCTAGATACGTGTACGTTCGGGGAAG
ACATGGGCCGGGTGAATATCGGTTGGAAGAGTTACAGCATCGACAAGCTC
GAGCACACCAATGGGTGCCCTTCGGCCACCGAAGCATACGAGACGGACCC
CGATGCTCTCAAAGGT
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