prot_H-elongata_contig119405.1495.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig119405.1495.1
Unique Nameprot_H-elongata_contig119405.1495.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length108
Homology
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BLAST of mRNA_H-elongata_contig119405.1495.1 vs. uniprot
Match: D8LJW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW3_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.460e-23
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:   45 MGYQLDLDRLCMITSSEIDVPIDPVTAIPLVCQWFCDSCASTKTGVVASTAKRSRASDLQVKNG 108
            MGYQLDLDR C+IT+S++D+PID VT +P+VCQWFCDSC+ST TGVVA+TA R +   L V  G
Sbjct:    1 MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRRQQRRLAVAAG 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119405.1495.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW3_ECTSI2.460e-2365.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 5..84
e-value: 0.0061
score: 25.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..105
e-value: 6.8E-7
score: 30.8
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 6..83
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 3..86
score: 8.671
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 4..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119405contigH-elongata_contig119405:1552..1875 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119405.1495.1mRNA_H-elongata_contig119405.1495.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig119405 1552..1875 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig119405.1495.1 ID=prot_H-elongata_contig119405.1495.1|Name=mRNA_H-elongata_contig119405.1495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
DDSSACVVCGESETVNDSEEQSSSSVESFALRCNSCRLWYHPWCMGYQLD
LDRLCMITSSEIDVPIDPVTAIPLVCQWFCDSCASTKTGVVASTAKRSRA
SDLQVKNG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD