prot_H-elongata_contig11821.1405.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11821.1405.1
Unique Nameprot_H-elongata_contig11821.1405.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length614
Homology
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BLAST of mRNA_H-elongata_contig11821.1405.1 vs. uniprot
Match: D7FYS1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS1_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 5.040e-36
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 0 
Query:    6 VIRHPQIFGEDRVKRGAYLASLAEGPSVAQDLGLSPKDRLISVEGLDVKTLPFDRIVALIRKASFPLTLVWSRQRKEGVPVNLPGTAVEAGAQQ 99
            V++H Q+FGE+R+KRGAYLA LAEGPS+AQDLGLSPKDRLI VEGLDVKTLPFDRIV LIRKA+FPLTLVWSRQRK G+     G A    +++
Sbjct:    2 VLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVGLIRKATFPLTLVWSRQRKAGIAATSKGRAASRASRE 95
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BLAST of mRNA_H-elongata_contig11821.1405.1 vs. uniprot
Match: A0A6H5KV99_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV99_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.710e-20
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0 
Query:    6 VIRHPQIFGEDRVKRGAYLASLAEGPSVAQDLGLSPKDRLISVEGLDVKTLPFDRI 61
            V++H Q+ GE+R+KRGAYLA LAEGPS+AQDLGLSPKDRLI VEGLDVKTLPFDRI
Sbjct:   43 VLKHAQVCGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI 98
[Close]
BLAST of mRNA_H-elongata_contig11821.1405.1 vs. uniprot
Match: D7FYS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.060e-5
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:  566 IKADLREFTGTRYCRSRLKQTLCHEWVRQEYQNVTALGQV-RDFGQMDIV 614
            +K  L EF GTRY RSRLKQTL HEW RQEY+   ALGQV R   +M+ V
Sbjct:    1 MKTVLPEFQGTRYARSRLKQTLAHEWARQEYRTGIALGQVDRGMTEMEFV 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11821.1405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYS1_ECTSI5.040e-3672.34PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KV99_9PHAE1.710e-2082.14PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS2_ECTSI1.060e-562.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 460..487
NoneNo IPR availableGENE3D2.30.42.10coord: 7..84
e-value: 1.3E-7
score: 33.4
IPR001478PDZ domainPROSITEPS50106PDZcoord: 21..80
score: 10.014
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 14..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11821contigH-elongata_contig11821:1491..8279 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11821.1405.1mRNA_H-elongata_contig11821.1405.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11821 1491..8279 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11821.1405.1 ID=prot_H-elongata_contig11821.1405.1|Name=mRNA_H-elongata_contig11821.1405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=614bp
MTTPHVIRHPQIFGEDRVKRGAYLASLAEGPSVAQDLGLSPKDRLISVEG
LDVKTLPFDRIVALIRKASFPLTLVWSRQRKEGVPVNLPGTAVEAGAQQP
PEHRALKPPATPVFQADAEPSPDAAAGGAGRKPAFEVGNGSAASALPSLR
TPRLSLALSSGGARRQYIDTQHHNPHDHQQRRQQQSLPSLRPVATSGGDI
SGSSGADSATGDSTVYERGVFHDEGARIVDGGDNGSGNDIKGNNNTSNFN
LAHVAEEWIRATSRGRATARVAREAEVLTEDKTEDGTGSKTRWTSTGMTQ
TASIRRQQQQQPGYHPRHHEPGQRGLVSSVQQFRHIEGVGVEEVMRAEKG
DEVMRDASRSPNLHPGDPGHHQQREQKLQHSGDGGSNSSNNSNSNGRSLS
EAAAGASVAEVRRHQEGIMANPSLLQGSADTANGGDHGGVSGGGKEPGMI
GDEGSEMEVEDQETRVMKEAKAEAMRARRRERDKARREKVRREMAAAGTL
GMHQRGQGGAVSGGVGGGGGHHHHPISRPQGVFGKGKRECGNAGGEVGAG
AGVGAPGAPDWLHPLIKADLREFTGTRYCRSRLKQTLCHEWVRQEYQNVT
ALGQVRDFGQMDIV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf