prot_H-elongata_contig117965.1389.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig117965.1389.1
Unique Name	prot_H-elongata_contig117965.1389.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	170

Homology

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BLAST of mRNA_H-elongata_contig117965.1389.1 vs. uniprot
Match: A0A6H5KKN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.740e-34
Identity = 74/166 (44.58%), Postives = 105/166 (63.25%), Query Frame = 0

Query:    2 AVTGRLWTLNIISFVLAIGLGVAFIATSMSKSFYKWRMNACDVTGD-----QGNGVLNYEIDLTVDIGWRQMTATYVDPSAEQY--CFEDVGKGGVYDIGDFEDNSASAAGFGMAASWAIAVLVALFTTVAMLKAIGGNRKHGVSLVTLMNLMVLMTLGVIAATTV 160
            A+ GR++ + +   +  I LG AFIATSMS  F+KW +  C   G+       + ++++ +D+TVDIGWR+ T T +D   E    C  ++ +G  Y IGD++DN+AS AG GM ASWA+ VLVAL+T VA+L A  G R+ GVSL  L N   L T+G++ ATTV
Sbjct:    6 AIAGRMYHMALFFLLSTIVLGAAFIATSMSSRFFKWSVEGCSAFGNVAIPGSSDLIVDFNLDMTVDIGWREFTVTSLDQGTETMGECLGELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTNWCALFTVGLVTATTV 171

[Close]

BLAST of mRNA_H-elongata_contig117965.1389.1 vs. uniprot
Match: D7G002_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G002_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 6.970e-34
Identity = 74/166 (44.58%), Postives = 103/166 (62.05%), Query Frame = 0

Query:    2 AVTGRLWTLNIISFVLAIGLGVAFIATSMSKSFYKWRMNACDVTGD-----QGNGVLNYEIDLTVDIGWRQMTATYVDPSAEQY--CFEDVGKGGVYDIGDFEDNSASAAGFGMAASWAIAVLVALFTTVAMLKAIGGNRKHGVSLVTLMNLMVLMTLGVIAATTV 160
            A+ G ++ + +   +  I LG AFIATSMS  F+KW +  C   G+         ++ Y++D+TVDIGWR+ T T +D   E    C E++ +G  Y IGD++DN+AS AG GM ASWA+ VLVAL+T VA+L A  G R+ GVSL  L     L T+G++ ATTV
Sbjct:    6 AIAGSMYHMAMFFLLSTIVLGAAFIATSMSSRFFKWSVEGCAAFGNGDVPGSSERIIVYDLDVTVDIGWREFTVTTLDQGTETIGECLEELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTKWCALFTVGLVTATTV 171

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig117965.1389.1 vs. uniprot

BLAST of mRNA_H-elongata_contig117965.1389.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KKN1_9PHAE	2.740e-34	44.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G002_ECTSI	6.970e-34	44.58	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 106..127
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..27
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..105
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 139..160
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 128..138
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 161..169
None	No IPR available	TMHMM	TMhelix		coord: 103..125
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 138..160

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig117965	contig	H-elongata_contig117965:318..1801 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig117965.1389.1	mRNA_H-elongata_contig117965.1389.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig117965 318..1801 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig117965.1389.1 ID=prot_H-elongata_contig117965.1389.1|Name=mRNA_H-elongata_contig117965.1389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MAVTGRLWTLNIISFVLAIGLGVAFIATSMSKSFYKWRMNACDVTGDQGN
GVLNYEIDLTVDIGWRQMTATYVDPSAEQYCFEDVGKGGVYDIGDFEDNS
ASAAGFGMAASWAIAVLVALFTTVAMLKAIGGNRKHGVSLVTLMNLMVLM
TLGVIAATTVSNSGRPIRD*