prot_H-elongata_contig117812.1384.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117812.1384.1
Unique Nameprot_H-elongata_contig117812.1384.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
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BLAST of mRNA_H-elongata_contig117812.1384.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.180e-22
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 0 
Query:    1 MVCADNYETLVNEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVH 56
            MVCADNYE LV++ S HP YVPF+VM+IVVGSMFLLSLLLGVTYDVFIEHTTEQV+
Sbjct:  300 MVCADNYEALVHDRSTHPAYVPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVN 355
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BLAST of mRNA_H-elongata_contig117812.1384.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 9.690e-22
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0 
Query:    1 MVCADNYETLVNEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVHTSL 59
            MVCADNYE LV++ S HP YVPF+VM+IVVGSMFLLSLLLGVTYDVFIEHTTEQ  +++
Sbjct:  300 MVCADNYEALVHDRSTHPAYVPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQARSTV 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117812.1384.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF40_ECTSI5.180e-2283.93Putative two-pore calcium channel (Partial) (Fragm... [more]
A0A6H5KF87_9PHAE9.690e-2277.97Cyclic nucleotide-binding domain-containing protei... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 43..63
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117812contigH-elongata_contig117812:1429..1617 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117812.1384.1mRNA_H-elongata_contig117812.1384.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117812 1429..1635 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117812.1384.1 ID=prot_H-elongata_contig117812.1384.1|Name=mRNA_H-elongata_contig117812.1384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MVCADNYETLVNEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEH
TTEQVHTSLLSFR
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