prot_H-elongata_contig117436.1363.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117436.1363.1
Unique Nameprot_H-elongata_contig117436.1363.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length70
Homology
BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 55.1 bits (131), Expect = 4.110e-7
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    5 LHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYCTAFGIDPKCWMRAAQDE 67
            L + G VARM D+RLP +++ GE+  GKR +    KR +D +     AF I+P  W  AAQD+
Sbjct:  835 LRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDK 897          
BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 48.5 bits (114), Expect = 7.880e-5
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0
Query:    2 KRILHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYCTAFGIDPKCWMRAAQD 66
            KR L + G + RM D+RLP I++ GE+  G R   +P KR +D + +   +  +  + W   A+D
Sbjct:  227 KRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 291          
BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 48.5 bits (114), Expect = 8.180e-5
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0
Query:    2 KRILHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYCTAFGIDPKCWMRAAQD 66
            KR L + G + RM D+RLP I++ GE+  G R   +P KR +D + +   +  +  + W   A+D
Sbjct:  294 KRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 358          
BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 48.5 bits (114), Expect = 8.370e-5
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0
Query:    2 KRILHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYCTAFGIDPKCWMRAAQD 66
            KR L + G + RM D+RLP I++ GE+  G R   +P KR +D + +   +  +  + W   A+D
Sbjct:  580 KRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 644          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117436.1363.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8C5PP25_9ANUR4.110e-742.86Reverse transcriptase domain-containing protein n=... [more]
A0A6S7JKI9_PARCT7.880e-533.85Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7K883_PARCT8.180e-533.85RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT8.370e-533.85RNA-directed DNA polymerase from mobile element jo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117436contigH-elongata_contig117436:1462..1671 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117436.1363.1mRNA_H-elongata_contig117436.1363.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117436 1462..1686 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117436.1363.1 ID=prot_H-elongata_contig117436.1363.1|Name=mRNA_H-elongata_contig117436.1363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MKRILHYTGQVARMHDDRLPNIVMRGEMIGGKRKRDQPAKRLQDRVTEYC
TAFGIDPKCWMRAAQDEPE*
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