prot_H-elongata_contig117119.1338.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117119.1338.1
Unique Nameprot_H-elongata_contig117119.1338.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length75
Homology
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: A0A6H5JJR2_9PHAE (DNA topoisomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.070e-30
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYVKD 60
            YN IFEF+NC MMGQ V+MKITSVTGHLME EFAEPYG++WGAC+P+ELFTAP+IRYVKD
Sbjct:   37 YNPIFEFDNCSMMGQSVNMKITSVTGHLMELEFAEPYGKKWGACQPIELFTAPLIRYVKD 96          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: A0A4D9AQC4_SALSN (DNA topoisomerase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9AQC4_SALSN)

HSP 1 Score: 67.0 bits (162), Expect = 5.080e-12
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYV 58
            YN+IFEF NC +  Q + M  TSVTGHLME EF + Y R+W  C PV+L+ AP+ +YV
Sbjct:   10 YNRIFEF-NCVVRSQLIQMSFTSVTGHLMELEFDDRY-RKWHHCDPVDLYHAPVKKYV 65          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: A0A8J6CBF4_DIALT (DNA topoisomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBF4_DIALT)

HSP 1 Score: 68.6 bits (166), Expect = 9.010e-12
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYVKDVRDPIRAN-----RRAQE 73
            YN  F F+     G+R  M +TSVTGHLME++FAE + R W +C PV LFTAP+++YV + +  I+ N     RRA E
Sbjct:   34 YNACFGFDYDFGNGRRAQMVVTSVTGHLMESDFAESF-RGWHSCDPVALFTAPVVKYVPEDKVDIKTNLENEARRADE 110          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: UPI0020098337 (DNA topoisomerase 3-alpha isoform X1 n=4 Tax=Salvia TaxID=21880 RepID=UPI0020098337)

HSP 1 Score: 68.2 bits (165), Expect = 1.220e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYV 58
            YN+IFEF NC +  Q + M  TSVTGHLME EF + Y R+W +C PV+L+ AP+ +YV
Sbjct:   47 YNRIFEF-NCVVRSQLIQMSFTSVTGHLMELEFDDRY-RKWHSCDPVDLYHAPVKKYV 102          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: S8DSX4_9LAMI (DNA topoisomerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DSX4_9LAMI)

HSP 1 Score: 62.0 bits (149), Expect = 8.330e-11
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYV 58
            +N+IFEF +  +  Q   M  TSVTGHLME EFAE Y R+W +C PV+L+ AP+ ++V
Sbjct:   44 FNKIFEF-SYSIQNQPFHMSFTSVTGHLMELEFAERY-RKWHSCDPVDLYNAPVKKFV 99          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: W4FMS7_9STRA (DNA topoisomerase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FMS7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.090e-10
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYVKDVRDPIRANRRAQEKR 75
            YN IFEF    +  Q V M  TSVTGHLME EFA P  R W +C PVELFTA I + V+  + PI A  R +  R
Sbjct:   34 YNAIFEFPY-QINNQNVDMAFTSVTGHLMELEFA-PSHRSWKSCDPVELFTAKIEKKVRGDQKPIEATLRTEAAR 106          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: A0A0A0LBG7_CUCSA (DNA topoisomerase n=14 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0LBG7_CUCSA)

HSP 1 Score: 65.1 bits (157), Expect = 1.490e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYVKD 60
            YN+IFEF N  + GQ  +M +TSVTGHLME  F E Y R+W +C PV+LF AP+ ++V +
Sbjct:   41 YNKIFEF-NYAIRGQSCNMIVTSVTGHLMELAFEERY-RKWHSCDPVQLFHAPVHKFVPE 98          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: A0A5A7TKA3_CUCME (DNA topoisomerase n=3 Tax=Benincaseae TaxID=1003877 RepID=A0A5A7TKA3_CUCME)

HSP 1 Score: 64.7 bits (156), Expect = 2.030e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYVKD 60
            YN+IFEF N  + GQ  +M +TSVTGHLME  F E Y R+W +C PV+LF AP+ ++V +
Sbjct:   41 YNKIFEF-NYAIRGQSCNMIVTSVTGHLMELAFEERY-RKWYSCDPVQLFHAPVHKFVPE 98          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: A0A5J5BVM9_9ASTE (DNA topoisomerase n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5BVM9_9ASTE)

HSP 1 Score: 63.5 bits (153), Expect = 5.180e-10
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYVKD 60
            YN+IFEF N  + GQ   M  TSVTGHLME EF + Y R+W +C PV+L+ AP+ ++V +
Sbjct:   41 YNKIFEF-NYTISGQPCQMLFTSVTGHLMELEFEDRY-RKWHSCDPVDLYHAPVRKFVPE 98          
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Match: A0A6P6T8K0_COFAR (DNA topoisomerase n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6T8K0_COFAR)

HSP 1 Score: 63.5 bits (153), Expect = 5.180e-10
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0
Query:    1 YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELFTAPIIRYVKDVRDPIR 66
            YN+IFEF N  + GQ   M  TSVTGHLME +F + + RRW +C PV+L+ AP+ ++V + +  IR
Sbjct:   53 YNKIFEF-NHTVNGQPCHMSFTSVTGHLMELDFDDRF-RRWHSCDPVDLYRAPVRKFVPEDKSDIR 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117119.1338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJR2_9PHAE4.070e-3081.67DNA topoisomerase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
A0A4D9AQC4_SALSN5.080e-1255.17DNA topoisomerase n=1 Tax=Salvia splendens TaxID=1... [more]
A0A8J6CBF4_DIALT9.010e-1247.44DNA topoisomerase n=1 Tax=Diacronema lutheri TaxID... [more]
UPI00200983371.220e-1155.17DNA topoisomerase 3-alpha isoform X1 n=4 Tax=Salvi... [more]
S8DSX4_9LAMI8.330e-1151.72DNA topoisomerase (Fragment) n=1 Tax=Genlisea aure... [more]
W4FMS7_9STRA1.090e-1052.00DNA topoisomerase n=2 Tax=Aphanomyces astaci TaxID... [more]
A0A0A0LBG7_CUCSA1.490e-1053.33DNA topoisomerase n=14 Tax=Cucurbitaceae TaxID=365... [more]
A0A5A7TKA3_CUCME2.030e-1053.33DNA topoisomerase n=3 Tax=Benincaseae TaxID=100387... [more]
A0A5J5BVM9_9ASTE5.180e-1051.67DNA topoisomerase n=2 Tax=Nyssaceae TaxID=4289 Rep... [more]
A0A6P6T8K0_COFAR5.180e-1048.48DNA topoisomerase n=3 Tax=Coffea TaxID=13442 RepID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.140coord: 1..72
e-value: 8.3E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR11390:SF21DNA TOPOISOMERASE 3-ALPHAcoord: 1..68
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 1..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117119contigH-elongata_contig117119:110..334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117119.1338.1mRNA_H-elongata_contig117119.1338.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117119 110..334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117119.1338.1 ID=prot_H-elongata_contig117119.1338.1|Name=mRNA_H-elongata_contig117119.1338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
YNQIFEFENCPMMGQRVSMKITSVTGHLMETEFAEPYGRRWGACRPVELF
TAPIIRYVKDVRDPIRANRRAQEKR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000380Topo_IA