prot_H-elongata_contig117034.1329.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig117034.1329.1
Unique Nameprot_H-elongata_contig117034.1329.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length79
Homology
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BLAST of mRNA_H-elongata_contig117034.1329.1 vs. uniprot
Match: A0A6H5KR72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR72_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.020e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0 
Query:   38 NNLAGLLATMGKSGEALPLFTRANQIYVRQLGDAHPHSVATQ 79
            NN+AGLLAT GK  EALPLF R++ IYVR LG+ HPHSVATQ
Sbjct:  259 NNVAGLLATTGKPEEALPLFARSHDIYVRHLGENHPHSVATQ 300
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BLAST of mRNA_H-elongata_contig117034.1329.1 vs. uniprot
Match: UPI0003775232 (tetratricopeptide repeat protein n=1 Tax=Frankia elaeagni TaxID=222534 RepID=UPI0003775232)

HSP 1 Score: 47.0 bits (110), Expect = 3.630e-5
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 0 
Query:   23 EACLGPDDIKVASSLNNLAGLLATMGKSGEALPLFTRA 60
            EA  GPD  +VA  LNNLA  L T+G++GEALPLF  A
Sbjct:    1 EATYGPDHPEVALGLNNLASALRTLGRAGEALPLFQHA 38
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117034.1329.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KR72_9PHAE8.020e-1173.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00037752323.630e-560.53tetratricopeptide repeat protein n=1 Tax=Frankia e... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13424TPR_12coord: 1..63
e-value: 2.4E-12
score: 46.9
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 2..78
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 2..78
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..79
e-value: 8.7E-19
score: 69.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117034contigH-elongata_contig117034:573..1321 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117034.1329.1mRNA_H-elongata_contig117034.1329.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig117034 573..1321 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig117034.1329.1 ID=prot_H-elongata_contig117034.1329.1|Name=mRNA_H-elongata_contig117034.1329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
IYNKQGEYQQALDIARRVTNAHEACLGPDDIKVASSLNNLAGLLATMGKS
GEALPLFTRANQIYVRQLGDAHPHSVATQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf