prot_H-elongata_contig11696.1323.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11696.1323.1
Unique Nameprot_H-elongata_contig11696.1323.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length110
Homology
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.030e-26
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 0
Query:   43 DPDDNVLYLVKWRGLPYDQSSWEHFKDIRFASDQILGFWDFCRPRTEEIAQMEDQLAKTGGSKAAG 108
            DPD  VLYLVKWRGLPYDQ SWEHFKDIRFASDQIL FWDFCRPR EE+A++  QL+  G  K  G
Sbjct:  585 DPDSLVLYLVKWRGLPYDQCSWEHFKDIRFASDQILDFWDFCRPRPEEMAEVNAQLSAGGKGKGGG 650          
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.630e-22
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0
Query:   43 DPDDNVLYLVKWRGLPYDQSSWEHFKDIRFASDQILGFWDFCRPRTEEI 91
            DPD  VLYLVKWRGLPYDQ SWEHFKDIRFASDQIL FWDFCRPR E +
Sbjct:  591 DPDSLVLYLVKWRGLPYDQCSWEHFKDIRFASDQILDFWDFCRPRPEGV 639          
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A448Z3J7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3J7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.030e-9
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0
Query:   30 KRGIGGIVAEESDDPDDNVLYLVKWRGLPYDQSSWEHFKDIRF-ASDQILGFWDFCRPRTEEIAQMEDQ 97
            K G+  I+ E   DP+DNV Y+VKW+GLP+ + +WE++KDI+  A+D+   FW   +P  EE      Q
Sbjct:  635 KEGLKEILTEIPWDPEDNVRYVVKWKGLPFAEITWEYWKDIKTDATDEAEDFWIRQQPPDEETLARNSQ 703          
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A7S4QWE4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QWE4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.900e-7
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 0
Query:   39 EESDDPDDNVLYLVKWRGLPYDQSSWEHFKDIRFAS-DQILGFWDFCR-PRTEEIAQMEDQL 98
            EE+ DP+DNV Y++KW+GL + + +WE++KDI+    DQ+  FW   R P T E+  + +++
Sbjct:  554 EEAWDPEDNVRYVIKWKGLQFQEMTWEYWKDIKHDFVDQVEDFWLRQRAPNTNEVTMILERV 615          
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A1Z5JDN6_FISSO (Chromodomain-helicase-DNA-binding protein 6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDN6_FISSO)

HSP 1 Score: 53.1 bits (126), Expect = 9.020e-6
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 0
Query:   43 DPDDNVLYLVKWRGLPYDQSSWEHFKDI-RFASDQILGFWDFCRP 86
            DP+DNV Y+VKW+G+P+ + +WE+++DI R A D+   FW   +P
Sbjct:  486 DPEDNVRYVVKWKGMPFTEMTWEYWRDIKRDAVDEAEDFWYRQKP 530          
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A4D9D793_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D793_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.220e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0
Query:   46 DNVLYLVKWRGLPYDQSSWEHFKDIR-FASDQILGFWDFCRP 86
            D V YLVKWRGLPY ++SWE + DI+ FA +++  FW   RP
Sbjct:  741 DRVRYLVKWRGLPYAEASWEKWADIKDFAYEEVGLFWVLQRP 782          
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A482SLZ8_9ARCH (Chromo domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLZ8_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 1.710e-5
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0
Query:   38 AEESDDPDDNVLYLVKWRGLPYDQSSWEHFKDIRFASDQILGFWDFCRP 86
            AEE+D P+  V YLVKWRGL YD+ +WE +++++    ++  FW   RP
Sbjct:   83 AEEAD-PESEVRYLVKWRGLSYDECTWERWEELKDWYSEVWLFWRTQRP 130          
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Match: A0A7R9W015_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W015_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.260e-5
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 0
Query:   43 DPDDNVLYLVKWRGLPYDQSSWEHFKDIRFAS-DQILGFW 81
            DP+D V Y+VKW+GLPY + +WE++KDI+    DQ   FW
Sbjct:  296 DPEDYVRYVVKWKGLPYAEITWEYWKDIKHDFVDQAEDFW 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11696.1323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LDU9_ECTSI5.030e-2674.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVU7_9PHAE5.630e-2285.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A448Z3J7_9STRA7.030e-942.03Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4QWE4_9STRA2.900e-740.32Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Z5JDN6_FISSO9.020e-646.67Chromodomain-helicase-DNA-binding protein 6 n=2 Ta... [more]
A0A4D9D793_9STRA1.220e-554.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A482SLZ8_9ARCH1.710e-544.90Chromo domain-containing protein n=1 Tax=archaeon ... [more]
A0A7R9W015_9STRA5.260e-552.50Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.40coord: 35..81
e-value: 1.8E-11
score: 45.3
IPR023780Chromo domainPFAMPF00385Chromocoord: 36..78
e-value: 2.8E-9
score: 36.8
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 31..82
score: 9.137
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 42..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11696contigH-elongata_contig11696:6850..8613 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11696.1323.1mRNA_H-elongata_contig11696.1323.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11696 6850..8614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11696.1323.1 ID=prot_H-elongata_contig11696.1323.1|Name=mRNA_H-elongata_contig11696.1323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
GQDGGNNVNKQLKSYRRETAKGVGDPGTGKRGIGGIVAEESDDPDDNVLY
LVKWRGLPYDQSSWEHFKDIRFASDQILGFWDFCRPRTEEIAQMEDQLAK
TGGSKAAGRG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023780Chromo_domain
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromo-like_dom_sf