prot_H-elongata_contig116648.1306.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116648.1306.1
Unique Nameprot_H-elongata_contig116648.1306.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length114
Homology
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BLAST of mRNA_H-elongata_contig116648.1306.1 vs. uniprot
Match: D8LMB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB7_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.600e-39
Identity = 73/113 (64.60%), Postives = 87/113 (76.99%), Query Frame = 0 
Query:    1 RDEFDRFGGRETPHVLRRGALIGGGEHAEDAIVELRRQLKIAKSGLVDLKALVRADVAWVQETVGTRMTRRAWESCCRWGFEKLAELMRRWEERSAAVAMAKWMRHREFKANK 113
            RDE+DRFGGRETP VLRR AL GGGE +  A+ +LR QL++ + GL+DL A VRADVAWVQETVG RM+RRA  SCC+WG EK+AEL  RWE RS   AM  W R+RE+ AN+
Sbjct:  494 RDEYDRFGGRETPSVLRRSALSGGGEKSWKAVEQLRHQLEVTECGLLDLNARVRADVAWVQETVGARMSRRARVSCCKWGSEKIAELTFRWERRSLDKAMGTWTRYREYMANR 606
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BLAST of mRNA_H-elongata_contig116648.1306.1 vs. uniprot
Match: A0A6H5K374_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K374_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.010e-8
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:    1 RDEFDRFGGRETPHVLRRGALIGGGEHAEDAIVELRRQLKIAKSG 45
            RDE+DRFGGRETP VLRR AL GGGE +  A+ +LR QL++ + G
Sbjct:  490 RDEYDRFGGRETPSVLRRSALSGGGEMSWKAVEQLRHQLEVTEVG 534
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116648.1306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMB7_ECTSI2.600e-3964.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K374_9PHAE2.010e-862.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116648contigH-elongata_contig116648:315..1288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116648.1306.1mRNA_H-elongata_contig116648.1306.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116648 315..1288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116648.1306.1 ID=prot_H-elongata_contig116648.1306.1|Name=mRNA_H-elongata_contig116648.1306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
RDEFDRFGGRETPHVLRRGALIGGGEHAEDAIVELRRQLKIAKSGLVDLK
ALVRADVAWVQETVGTRMTRRAWESCCRWGFEKLAELMRRWEERSAAVAM
AKWMRHREFKANK*
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