prot_H-elongata_contig116646.1305.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116646.1305.1
Unique Nameprot_H-elongata_contig116646.1305.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length306
Homology
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BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.830e-38
Identity = 118/169 (69.82%), Postives = 128/169 (75.74%), Query Frame = 0 
Query:    1 MLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVWDPRTGASLAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRESLITDDVIPIVLPHKNHAGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTRGAGRDKFGGGQVYRREAPQ 169
            ML LRGH+SVITD+ VSPDNSMLV                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++SL T+DV+PIVLPH N  G  IPV CLSVSPAGNLIAAGC DGAVRVWAYGD+DDDAAWG+GKHNTR  GRD  G G+VYR EAP+
Sbjct:  391 MLCLRGHASVITDMDVSPDNSMLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGQDSLATEDVVPIVLPHTNEQGGMIPVMCLSVSPAGNLIAAGCSDGAVRVWAYGDSDDDAAWGTGKHNTRRTGRDTIGRGEVYRSEAPR 559
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BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.520e-32
Identity = 119/194 (61.34%), Postives = 127/194 (65.46%), Query Frame = 0 
Query:    1 MLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVWDPRTGASLAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRE-------------------------SLITDDVIPIVLPHKNHAGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTRGAGRDKFGGGQVYRREAPQ 169
            ML LRGH+SVITD+ VSPDNSMLV                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +                          SL T+DV+PIVLPH N  G  IPV CLSVSPAGNLIAAGC DGAVRVWAYGD+DDDAAWG GKHNTR AGRD  G G+VYR EAP+
Sbjct:   76 MLCLRGHASVITDMDVSPDNSMLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGQGRWGRARLGRGPCFIVLFLLASGSHGSLATEDVVPIVLPHTNEQGGMIPVMCLSVSPAGNLIAAGCIDGAVRVWAYGDSDDDAAWGIGKHNTRRAGRDTIGRGEVYRSEAPR 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEP1_ECTSI3.830e-3869.82WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KTA2_9PHAE1.520e-3261.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 23..37
score: 38.92
coord: 119..133
score: 29.01
coord: 65..79
score: 38.71
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 39..78
e-value: 1.1E-7
score: 41.6
coord: 1..36
e-value: 4.5E-5
score: 32.9
coord: 88..132
e-value: 0.0021
score: 27.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 3..36
e-value: 6.6E-9
score: 36.3
coord: 99..131
e-value: 1.1E-5
score: 26.1
coord: 42..78
e-value: 1.1E-4
score: 22.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 46..87
score: 15.22
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 4..45
score: 17.192
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 100..131
score: 10.909
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..150
e-value: 1.1E-37
score: 131.5
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 3..131
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 65..79
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 4..141
score: 30.875
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116646contigH-elongata_contig116646:356..1768 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116646.1305.1mRNA_H-elongata_contig116646.1305.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116646 356..1798 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116646.1305.1 ID=prot_H-elongata_contig116646.1305.1|Name=mRNA_H-elongata_contig116646.1305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
MLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVWDPRTGASLAVLRGHE
APVNLVRFAPGDSVAMSASEDGTCRLWDLRDRESLITDDVIPIVLPHKNH
AGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTR
GAGRDKFGGGQVYRREAPQQQPRPAPPPPAAVEPPQGDISNGLAAAVTAA
AAWGVAAGNRGEAERDASVSGSAAGSAFTRAWERAGSMGLMVGALGGNDL
PGLQGGQEAAVAAAAATVGEGDVGRGREGGSGADGAGTAAKDKGGLEVRL
GTMMFG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf