prot_H-elongata_contig11661.1303.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig11661.1303.1
Unique Name	prot_H-elongata_contig11661.1303.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	146

Homology

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 1.210e-86
Identity = 127/143 (88.81%), Postives = 140/143 (97.90%), Query Frame = 0

Query:    3 YLLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            +L++QM+VKKLISGCKWIS ++VHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVR A+FH+HYPLMASASDDGSVHVFH+TVYSDLLRNPL+VPLKILRGH+VTGGLGVMAL FHPRQPW+FTAGADGAVRLFQD+
Sbjct:  500 HLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEVTGGLGVMALVFHPRQPWVFTAGADGAVRLFQDV 642

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 3.230e-84
Identity = 126/143 (88.11%), Postives = 140/143 (97.90%), Query Frame = 0

Query:    3 YLLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            +L++QM+VKKLISGCKWIS ++VHP+GDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVR A+FH+HYPLMASA DDGSVHVFH+TVYSDLLRNPL+VPLKILRGH+VTGGLGVMALAFHPRQPW+FTAGADGAVRLFQD+
Sbjct:  740 HLIKQMLVKKLISGCKWISCIDVHPTGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASAGDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEVTGGLGVMALAFHPRQPWVFTAGADGAVRLFQDV 882

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: A0A7S3YFA3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA3_HETAK)

HSP 1 Score: 235 bits (600), Expect = 1.740e-76
Identity = 106/143 (74.13%), Postives = 127/143 (88.81%), Query Frame = 0

Query:    3 YLLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            +L++Q +VKK+++GCKWIS+M+VHP+GDH++VGSYDRRV W DLDL+S PYKTLKYH +AVR A +H  YPLMASA+DDG VHVFH+ VYSDLLR PLIVPLKILRGH V GGLGV+A A+HPRQPWLF+AGADG VRLFQD+
Sbjct:   82 HLVKQALVKKVLTGCKWISAMDVHPTGDHVLVGSYDRRVVWCDLDLSSKPYKTLKYHARAVRGAAYHPRYPLMASAADDGRVHVFHAAVYSDLLREPLIVPLKILRGHAVAGGLGVLAAAWHPRQPWLFSAGADGTVRLFQDV 224

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: A0A7S2ES45_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ES45_TRICV)

HSP 1 Score: 229 bits (585), Expect = 5.060e-74
Identity = 100/143 (69.93%), Postives = 126/143 (88.11%), Query Frame = 0

Query:    3 YLLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            +L++Q MVK+L++GC+W+SS++VHP+GDH++VGS DRR  WFDLDL STPYKTLKYH +AVR   +H+ YPLMAS+SDDG++HVFHSTVYSDL+RNPLIVP+K+LRGH VT  LGV+A AFHP QPWLF+AGADG + L+QDI
Sbjct:   95 HLVRQTMVKRLMTGCRWVSSLDVHPTGDHVLVGSLDRRAVWFDLDLGSTPYKTLKYHERAVRSVSYHRRYPLMASSSDDGTIHVFHSTVYSDLMRNPLIVPVKVLRGHSVTDKLGVLAFAFHPSQPWLFSAGADGKILLWQDI 237

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: W7TL91_9STRA (Ribosome biogenesis protein bop1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL91_9STRA)

HSP 1 Score: 227 bits (578), Expect = 4.240e-73
Identity = 99/142 (69.72%), Postives = 126/142 (88.73%), Query Frame = 0

Query:    3 YLLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQD 144
            +L++Q+++KKL+SGCKWISS+++HP+GDH++V SYDRRV WFDLDL+S PYKTLKYH+KAVR   FH+ YPLMAS +DDG+VHVFH+TVY DL++NPL+VP+KILRGH V G +GVMALAFHP QPW+F+ GADG V L+QD
Sbjct:   84 HLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: A0A836CBU6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU6_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.020e-71
Identity = 108/137 (78.83%), Postives = 126/137 (91.97%), Query Frame = 0

Query:    9 MVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            +VK+L+SGCKWIS M++HPSGDH+++GS DRRV WFD+DLASTPY+ LKYH+KAVR A FHK +PLMASASDDG+VHVFH+ VYSDLLR+PLIVPLKILRG  VTGGLGV++LAFHPRQPWLF+AGADG VRLFQDI
Sbjct:  595 LVKRLLSGCKWISYMDIHPSGDHVLLGSLDRRVTWFDMDLASTPYRALKYHSKAVRCAMFHKQFPLMASASDDGAVHVFHAAVYSDLLRSPLIVPLKILRGAAVTGGLGVLSLAFHPRQPWLFSAGADGVVRLFQDI 731

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: A0A7S3HLF9_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF9_9STRA)

HSP 1 Score: 238 bits (606), Expect = 4.500e-71
Identity = 104/143 (72.73%), Postives = 128/143 (89.51%), Query Frame = 0

Query:    3 YLLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            +L++Q +VKKL+SGCKW+SS++VHPSGDH+IVGSYDRRV WFDLDL+STPYKTLK+H KAVR  +FH+ YPLMASASDDG++HVFH  VYSDL RNPL+VPLK+LRGH V GG+GV ++AFHP+QPWL +AGADG + LFQD+
Sbjct:  715 HLVEQKLVKKLVSGCKWLSSIDVHPSGDHVIVGSYDRRVVWFDLDLSSTPYKTLKFHEKAVRSLQFHRRYPLMASASDDGNIHVFHCMVYSDLARNPLLVPLKVLRGHGVVGGVGVFSVAFHPKQPWLVSAGADGVINLFQDL 857

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: A0A0P1AAJ0_PLAHL (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAJ0_PLAHL)

HSP 1 Score: 236 bits (601), Expect = 2.000e-70
Identity = 109/142 (76.76%), Postives = 126/142 (88.73%), Query Frame = 0

Query:    4 LLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            L++Q +VKKL SG KWISSM VHP+GDHL+VGSYDRR+ WFDLDL+S P+KTLKYH KAVRD  FH  YPLMASASDDG+VH+FH+ VYSDL++NPLIVPLKILRGH+VTGGLGVMALAFHP  PW+ T GADG++RLFQDI
Sbjct:  702 LVKQSIVKKLSSGVKWISSMAVHPNGDHLLVGSYDRRLCWFDLDLSSRPFKTLKYHEKAVRDVSFHPKYPLMASASDDGTVHIFHAMVYSDLMKNPLIVPLKILRGHEVTGGLGVMALAFHPILPWVVTGGADGSIRLFQDI 843

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: A0A6G0X4S1_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4S1_9STRA)

HSP 1 Score: 234 bits (597), Expect = 3.470e-70
Identity = 108/142 (76.06%), Postives = 123/142 (86.62%), Query Frame = 0

Query:    4 LLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            L+QQ MVKKL SG KWIS M VHPSGDH++VGSYDRR+ WFDLDL+STPYKTLKYH KA R   FHK YPLMASASDDG++H+FHS VYSDL++NPLIVPLKILRGH+VTGGLGVMALAFHP  PW+ + GAD  +RLFQ+I
Sbjct:  644 LVQQAMVKKLSSGVKWISCMHVHPSGDHVLVGSYDRRLCWFDLDLSSTPYKTLKYHEKATRAVTFHKRYPLMASASDDGTIHIFHSMVYSDLIKNPLIVPLKILRGHEVTGGLGVMALAFHPTLPWVASGGADNTIRLFQNI 785

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BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Match: B7GDR2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDR2_PHATC)

HSP 1 Score: 231 bits (589), Expect = 6.780e-70
Identity = 104/143 (72.73%), Postives = 126/143 (88.11%), Query Frame = 0

Query:    3 YLLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPLIVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI 145
            +L++Q MVK+L SGC+WISS++VHPSGDHLIVGS DRR+ WFDLDL+STPYKTLKYH +A+R  R+H  YPLMASASDDG+VHVFHS VYSDL+RNPL+VP+KILRGH VT  LGV+++ FHP QPW+FTAGADG + L+QDI
Sbjct:  520 HLVKQNMVKRLASGCRWISSIDVHPSGDHLIVGSLDRRMIWFDLDLSSTPYKTLKYHERALRSCRYHNRYPLMASASDDGAVHVFHSMVYSDLMRNPLVVPVKILRGHAVTKKLGVLSIVFHPTQPWIFTAGADGRIFLYQDI 662

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot

BLAST of mRNA_H-elongata_contig11661.1303.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G698_ECTSI	1.210e-86	88.81	Ribosome biogenesis protein BOP1 homolog n=1 Tax=E...	[more]
A0A6H5JI55_9PHAE	3.230e-84	88.11	Ribosome biogenesis protein BOP1 homolog n=1 Tax=E...	[more]
A0A7S3YFA3_HETAK	1.740e-76	74.13	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2ES45_TRICV	5.060e-74	69.93	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
W7TL91_9STRA	4.240e-73	69.72	Ribosome biogenesis protein bop1 (Fragment) n=1 Ta...	[more]
A0A836CBU6_9STRA	1.020e-71	78.83	Ribosome biogenesis protein BOP1 homolog n=1 Tax=T...	[more]
A0A7S3HLF9_9STRA	4.500e-71	72.73	Ribosome biogenesis protein BOP1 homolog n=1 Tax=S...	[more]
A0A0P1AAJ0_PLAHL	2.000e-70	76.76	Ribosome biogenesis protein BOP1 homolog n=1 Tax=P...	[more]
A0A6G0X4S1_9STRA	3.470e-70	76.06	Ribosome biogenesis protein BOP1 homolog n=1 Tax=A...	[more]
B7GDR2_PHATC	6.780e-70	72.73	Predicted protein (Fragment) n=1 Tax=Phaeodactylum...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 6..45 e-value: 0.12 score: 21.5 coord: 49..88 e-value: 2.4E-5 score: 33.7 coord: 100..143 e-value: 0.0012 score: 28.2
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 15..41 e-value: 0.25 score: 12.3 coord: 53..87 e-value: 0.0035 score: 18.1 coord: 103..142 e-value: 8.0E-6 score: 26.5
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 3..144 e-value: 1.1E-70 score: 240.3
IPR028598	WD repeat BOP1/Erb1	PANTHER	PTHR17605	RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN	coord: 4..142
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 13..145 score: 10.786
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 13..143

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig11661	contig	H-elongata_contig11661:6069..7688 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig11661.1303.1	mRNA_H-elongata_contig11661.1303.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig11661 5987..7751 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig11661.1303.1 ID=prot_H-elongata_contig11661.1303.1|Name=mRNA_H-elongata_contig11661.1303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MPYLLQQMMVKKLISGCKWISSMEVHPSGDHLIVGSYDRRVAWFDLDLAS
TPYKTLKYHTKAVRDARFHKHYPLMASASDDGSVHVFHSTVYSDLLRNPL
IVPLKILRGHQVTGGLGVMALAFHPRQPWLFTAGADGAVRLFQDI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR028598	BOP1/Erb1
IPR017986	WD40_repeat_dom
IPR036322	WD40_repeat_dom_sf