prot_H-elongata_contig116427.1292.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116427.1292.1
Unique Nameprot_H-elongata_contig116427.1292.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length128
Homology
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.700e-58
Identity = 104/123 (84.55%), Postives = 109/123 (88.62%), Query Frame = 0
Query:    1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQE 123
            RCLIVGLSALR TQQ FDPA L+ET+EAVFDATACYFPVTFTPPPNDPH ISPDAL+TGLE VLVGSPGMA HVLPMLLDKLSSEVSTAKEA+LK MVA VRAF  P VG HLRAIG AM +E
Sbjct:  275 RCLIVGLSALRKTQQGFDPAVLQETAEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 397          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 8.540e-58
Identity = 105/123 (85.37%), Postives = 109/123 (88.62%), Query Frame = 0
Query:    1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQE 123
            RCLIVGLSALR TQQ FDPA L+ETSEAVFDATACYFPVTFTPPPNDPH ISPDAL+TGLE VLVGSPGMA HVLPMLLDKLSSEVSTAKEA+LK MVA VRAF  P VG HLRAIG AM +E
Sbjct:  229 RCLIVGLSALRKTQQGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 351          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: W7U6Q4_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Q4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.790e-21
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 0
Query:    1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 124
            RCLI+ L+ +   Q  F PAA +   EA+FD TACYFP+TFTPPPNDP+ I+PD L   L   L   P MA  +LP+L+DKL+S    AK  AL  +  A R      +  +L ++  A+FQE+
Sbjct:  249 RCLILCLNIISRVQVIF-PAASDAHIEALFDITACYFPITFTPPPNDPYGITPDVLSHALREALTRRPSMAEFLLPLLVDKLTSTHVPAKLEALLTLQVATRTIGMRAMLGNLASVTGALFQEI 371          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A2P6TWM0_CHLSO (MMS19 nucleotide excision repair protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TWM0_CHLSO)

HSP 1 Score: 87.8 bits (216), Expect = 1.170e-17
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 0
Query:    1 RCLIVGLSAL--------RITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 124
            RCL++   A+        R  ++      LEE++E +F+  ACYFPVTFTPPPNDP+KI+   L  GLER L   P  A  V+P++ +KLSS +  AK  AL  + A   ++ P  +  H  A+  A+  E+
Sbjct:  200 RCLLLSFDAIQALLALYHRQPEEALCRERLEESAEELFEVLACYFPVTFTPPPNDPNKITRADLARGLERTLAAEPLFAPFVVPLIAEKLSSSIRQAKLDALSLLGACAASYGPAPLADHASALWAALRPEL 331          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A316YNL1_9BASI (MMS19 nucleotide excision repair protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YNL1_9BASI)

HSP 1 Score: 87.0 bits (214), Expect = 2.260e-17
Identity = 48/127 (37.80%), Postives = 70/127 (55.12%), Query Frame = 0
Query:    1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEVRYA 127
            R L+   +  R+   D+D     E +EA FD T CYFP+TF PPP+DP+ IS + L+  L +VL+ SP +A H +P+LL+KL +    AK   L  +  A+  F      AH   + EA   E+ +A
Sbjct:  193 RNLVYIFAMDRVVMLDWDDIMDSELTEAFFDTTYCYFPITFRPPPDDPYGISTNTLRLSLRKVLIASPLLAPHAMPLLLEKLQASGGNAKRDTLDTLKEALPVFGRAAAKAHESPLWEAFKIEIMHA 319          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A2P6V489_9CHLO (MMS19 nucleotide excision repair protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V489_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 2.300e-17
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 0
Query:    1 RCLIVGLSALRIT--------QQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAI 116
            RCL++   A R T        ++      LEE+SE +F+  AC FP+ FTPPPNDP++I+ + L  GLE VL   P  A H++P++++KLSS +  AK  +L  + A   ++ P  +  H   I
Sbjct:  908 RCLLLSFEATRSTLALYHAQPEESLCRGRLEESSEELFEVLACNFPIAFTPPPNDPNRITREQLAAGLEAVLAAEPRFAPHLVPLIMEKLSSSIRQAKLDSLSLLGACAASYGPRPLAPHASTI 1031          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: E1Z4Q7_CHLVA (MMS19 nucleotide excision repair protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z4Q7_CHLVA)

HSP 1 Score: 83.2 bits (204), Expect = 4.970e-16
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 0
Query:    1 RCLIVGLSALR----ITQQDFDPAA----LEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 124
            RCL++   A+R    +  +  D +     LEE +E +F+  ACYFPVTFTPPPNDP++IS + L  GLE  LV  P  A +++P+  +KLSS +  AK  +L  + A    + P  +  H+  +  A+  E+
Sbjct:  192 RCLLLCFEAVRCLLALYHRQPDTSLCHERLEEGAEELFEVLACYFPVTFTPPPNDPNRISREDLAAGLEAALVAEPLFAPYLVPLACEKLSSTLRQAKLDSLSLLGACAEGYGPAPLAGHVSTLWSALRPEL 323          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: A0A8K1CHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHX8_PYTOL)

HSP 1 Score: 82.0 bits (201), Expect = 1.250e-15
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 0
Query:    7 LSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 124
            +S L    +  D A L++     FD  +CYFP+TFTPPPNDP+ I+ + L T L +    S  +ARHVLP LL+KLSS V+ AK  +++ +V    A++      +L  I  A++ EV
Sbjct:  205 MSTLASVFEKHDTAILQQ----YFDVVSCYFPITFTPPPNDPYGITSEDLITSLRKAFAASDLLARHVLPFLLEKLSSTVTEAKLDSIQTLVFCCEAYSINVTLLYLHTIATALYHEV 318          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: UPI000D738490 (MMS19 nucleotide excision repair protein homolog isoform X1 n=4 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D738490)

HSP 1 Score: 80.9 bits (198), Expect = 3.160e-15
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 0
Query:    1 RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEVR 125
            R L+      R+  Q F   +L    E +F+  ACYFPV F PPPNDPH I+ D L+  L+ V+  +P  A++  P+LL+K+SS+V +AK  ALK ++A +  +    +  +L ++   + +EVR
Sbjct:  179 RNLMAAFRCSRLICQYF---SLGTMVEDMFEVNACYFPVDFVPPPNDPHGITRDDLRLALQHVMSATPLFAQYCYPLLLEKMSSDVQSAKVDALKTLIACLPVYQMNHLQEYLGSLFSQIIREVR 300          
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Match: UPI001455587C (MMS19 nucleotide excision repair protein homolog isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI001455587C)

HSP 1 Score: 80.5 bits (197), Expect = 4.340e-15
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 0
Query:    7 LSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHKISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAAVRAFAPPRVGAHLRAIGEAMFQEV 124
            L+A +I Q       +   +E +F+ T+CYFP+ F PPPNDPH IS D+L  GL   L G+P  A   LP+L++KL+SE+ +AK  A + + A    +    +  +L A+     +EV
Sbjct:  232 LTAFQIVQTLIQHFPIGIFAEELFEVTSCYFPIDFRPPPNDPHGISTDSLIQGLRGCLAGTPKFAEFCLPLLMEKLASELQSAKIDAFETLAACAPVYGAKHLKDYLEAVWSYCRKEV 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116427.1292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCY0_9PHAE1.700e-5884.55MMS19 nucleotide excision repair protein (Fragment... [more]
D8LJJ0_ECTSI8.540e-5885.37MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
W7U6Q4_9STRA3.790e-2145.16MMS19 nucleotide excision repair protein n=2 Tax=M... [more]
A0A2P6TWM0_CHLSO1.170e-1738.64MMS19 nucleotide excision repair protein n=1 Tax=C... [more]
A0A316YNL1_9BASI2.260e-1737.80MMS19 nucleotide excision repair protein n=1 Tax=A... [more]
A0A2P6V489_9CHLO2.300e-1737.10MMS19 nucleotide excision repair protein n=1 Tax=M... [more]
E1Z4Q7_CHLVA4.970e-1637.12MMS19 nucleotide excision repair protein n=1 Tax=C... [more]
A0A8K1CHX8_PYTOL1.250e-1539.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000D7384903.160e-1536.80MMS19 nucleotide excision repair protein homolog i... [more]
UPI001455587C4.340e-1537.29MMS19 nucleotide excision repair protein homolog i... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029240MMS19, N-terminalPFAMPF14500MMS19_Ncoord: 1..124
e-value: 6.1E-34
score: 117.8
IPR039920DNA repair/transcription protein MET18/MMS19PANTHERPTHR12891DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19coord: 1..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116427contigH-elongata_contig116427:902..1878 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116427.1292.1mRNA_H-elongata_contig116427.1292.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116427 902..1878 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116427.1292.1 ID=prot_H-elongata_contig116427.1292.1|Name=mRNA_H-elongata_contig116427.1292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
RCLIVGLSALRITQQDFDPAALEETSEAVFDATACYFPVTFTPPPNDPHK
ISPDALKTGLERVLVGSPGMARHVLPMLLDKLSSEVSTAKEAALKGMVAA
VRAFAPPRVGAHLRAIGEAMFQEVRYA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029240MMS19_N
IPR039920MET18/MMS19