prot_H-elongata_contig116285.1283.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116285.1283.1
Unique Nameprot_H-elongata_contig116285.1283.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length180
Homology
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.630e-51
Identity = 112/208 (53.85%), Postives = 139/208 (66.83%), Query Frame = 0
Query:    1 KARAELAVRVVEACVRTKRVQAEAGRISSEVAMARSKLDALALDIEEEAAA-ADAEG--------------------------RRTLEGLLAKDAEIPTRAGLAQDEKEAAVTEARRRHALRNSLTRYRGKAVPTILSNRQMMGRRFGS-RIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            +AR   A RVVEAC+ + RV+A A ++ S++A  +SKL+AL LD   EA A A A G                          RR  E LLA++  +P    LA+DEK+AA+ EAR+R A+ NSLTRY GKAVPTILSNR+  G RFG  RIAG V LRG SSRLL D MRP++TANGHG++PV+CIKFD+TGQ+IFTGADD L+KVW
Sbjct:  176 RARTRCATRVVEACIESVRVRASARKVYSDLATVKSKLEALELDAASEARAIASAAGSATRGRCRAALVPGQESQAELTRLALRRQREELLAREVVLPEEVTLAEDEKDAALAEARQRGAMHNSLTRYAGKAVPTILSNRRAGGARFGGGRIAGRVPLRGASSRLLDDRMRPLITANGHGVHPVFCIKFDRTGQYIFTGADDALVKVW 383          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.390e-22
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 0
Query:  117 GRRFGS-RIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            G RFG  RIAG V LRG SSRLL D MRP++TANGHG++PV+CIKFD+TGQ+IFTGADD L+KVW
Sbjct:    4 GTRFGGGRIAGRVPLRGASSRLLDDRMRPLITANGHGVHPVFCIKFDRTGQYIFTGADDALVKVW 68          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A196S8W8_BLAHN (Bromodomain and WD repeat-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S8W8_BLAHN)

HSP 1 Score: 59.3 bits (142), Expect = 5.030e-7
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0
Query:  134 SSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            SS LL    RP++T  GH  +P+Y +  D T +F FTGADDHLIKVW
Sbjct:  293 SSSLLLSKYRPLITLAGHSNSPIYGLAIDSTQRFAFTGADDHLIKVW 339          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A482RVX8_9ARCH (Bromo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVX8_9ARCH)

HSP 1 Score: 58.2 bits (139), Expect = 1.240e-6
Identity = 20/36 (55.56%), Postives = 29/36 (80.56%), Query Frame = 0
Query:  145 IVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            ++T +GH +NP YC  FD TGQ++ TGADD+L+K+W
Sbjct:  235 LLTVSGHMLNPAYCSVFDSTGQYVLTGADDYLVKIW 270          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A0P5P4W6_9CRUS (Bromodomain and WD repeat-containing protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5P4W6_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 1.250e-6
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 0
Query:  120 FGSRIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            FG    GS   RG++   L   ++      GH ++ VYC+ FD+TGQ+IFTGADD LIK+W
Sbjct:   82 FGREFTGSFDQRGIAPAKLYSRVQLFCRTLGH-LSAVYCVLFDRTGQYIFTGADDLLIKIW 141          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A162PTZ1_9CRUS (Putative Bromodomain and WD repeat-containing protein n=3 Tax=Daphnia magna TaxID=35525 RepID=A0A162PTZ1_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 1.270e-6
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 0
Query:  120 FGSRIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            FG    GS   RG++   L   ++      GH ++ VYC+ FD+TGQ+IFTGADD LIK+W
Sbjct:  155 FGREFTGSFDQRGIAPAKLYSRVQLFCRTLGH-LSAVYCVLFDRTGQYIFTGADDLLIKIW 214          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A7S4N995_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N995_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.390e-6
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0
Query:  117 GRRFGSRIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            G R   R+ G  SL     +LL   +   VTA+ H   PVYC++FD+TG++  TGADDHL K++
Sbjct:  263 GHRCPGRLPGPASLVLPRKQLLSQRLSHSVTASCHLFYPVYCLRFDRTGRYFVTGADDHLAKLF 326          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A7S4JSM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JSM7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.700e-6
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0
Query:  117 GRRFGSRIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            G R   R+ G  SL     +LL   +   VTA+ H   PVYC++FD+TG++  TGADDHL K++
Sbjct:  429 GHRCPGRLPGPASLVLPRKQLLSQRLSHSVTASCHLFYPVYCLRFDRTGRYFVTGADDHLAKLF 492          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: T1FRU6_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FRU6_HELRO)

HSP 1 Score: 56.2 bits (134), Expect = 5.810e-6
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0
Query:  103 GKAVPTILSNRQMMGRRFGSRIAGSVSLRGMSSRLLGDHMRPIVTAN----GHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            G  +P +LS+R+ MG            +R     L+  HM   +T      GH ++ VYC+ FD+TG +IFTG+DDHL+KVW
Sbjct:  105 GPPLPVLLSSRETMG-----------CIR--MDLLMSSHMYNQMTLQFRLLGH-LSSVYCVLFDRTGHYIFTGSDDHLVKVW 172          
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: UPI001EE61CA4 (bromodomain and WD repeat-containing protein 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE61CA4)

HSP 1 Score: 55.8 bits (133), Expect = 7.290e-6
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0
Query:  150 GHGINPVYCIKFDQTGQFIFTGADDHLIKVW 180
            GH ++ VYC+ FD+TGQ+IFTGADDHL+K+W
Sbjct:  183 GH-LSAVYCVSFDRTGQYIFTGADDHLVKIW 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LEP1_ECTSI1.630e-5153.85WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KTA2_9PHAE4.390e-2273.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A196S8W8_BLAHN5.030e-755.32Bromodomain and WD repeat-containing protein n=1 T... [more]
A0A482RVX8_9ARCH1.240e-655.56Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A0P5P4W6_9CRUS1.250e-645.90Bromodomain and WD repeat-containing protein (Frag... [more]
A0A162PTZ1_9CRUS1.270e-645.90Putative Bromodomain and WD repeat-containing prot... [more]
A0A7S4N995_9STRA3.390e-643.75Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4JSM7_9STRA3.700e-643.75Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
T1FRU6_HELRO5.810e-639.02Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
UPI001EE61CA47.290e-667.74bromodomain and WD repeat-containing protein 3-lik... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatPFAMPF00400WD40coord: 148..180
e-value: 1.3E-6
score: 29.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 156..180
score: 11.077
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 122..180
e-value: 1.9E-5
score: 25.5
NoneNo IPR availablePANTHERPTHR16266:SF17BRWD3coord: 67..180
NoneNo IPR availablePANTHERPTHR16266WD REPEAT DOMAIN 9coord: 67..180
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 149..180
score: 9.942

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116285contigH-elongata_contig116285:391..1809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116285.1283.1mRNA_H-elongata_contig116285.1283.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116285 391..1809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116285.1283.1 ID=prot_H-elongata_contig116285.1283.1|Name=mRNA_H-elongata_contig116285.1283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
KARAELAVRVVEACVRTKRVQAEAGRISSEVAMARSKLDALALDIEEEAA
AADAEGRRTLEGLLAKDAEIPTRAGLAQDEKEAAVTEARRRHALRNSLTR
YRGKAVPTILSNRQMMGRRFGSRIAGSVSLRGMSSRLLGDHMRPIVTANG
HGINPVYCIKFDQTGQFIFTGADDHLIKVW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom