prot_H-elongata_contig116267.1281.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116267.1281.1
Unique Nameprot_H-elongata_contig116267.1281.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
BLAST of mRNA_H-elongata_contig116267.1281.1 vs. uniprot
Match: D7G6G4_ECTSI (TMF_TATA_bd domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 8.930e-18
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0
Query:    1 QGQLQETLERVRREADMREDEANKRXXXXRRRWKDAVARAEALQAEAHESTAPLLRQV 58
            Q QLQETLERVRREAD REDEA  R    RRRWK+AV RAEALQAEAHESTAPLLRQV
Sbjct:  968 QSQLQETLERVRREADHREDEAKDRQEDVRRRWKEAVGRAEALQAEAHESTAPLLRQV 1025          
BLAST of mRNA_H-elongata_contig116267.1281.1 vs. uniprot
Match: A0A6H5K2Z4_9PHAE (TMF_TATA_bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.930e-13
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    1 QGQLQETLERVRREADMREDEANKRXXXXRRRWKDAVARAEALQAEAHESTAPLLRQV 58
            Q QLQETLERVRREAD RED+    XXXX   WK+AV RAEALQAEAHESTAPLLRQV
Sbjct:  961 QSQLQETLERVRREADRREDDXXXXXXXXXXXWKEAVGRAEALQAEAHESTAPLLRQV 1018          
BLAST of mRNA_H-elongata_contig116267.1281.1 vs. uniprot
Match: A0A835ZC05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC05_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.480e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    6 ETLERVRREADMREDEANKRXXXXRRRWKDAVARAEALQAEAHESTAPLLRQ 57
            E L R  R++ MRED   +     R RW++A+AR EA+Q++AH + APLLRQ
Sbjct:   88 EALSRAMRDSGMREDGLQEELRSVRARWREALARCEAIQSDAHAAAAPLLRQ 139          
BLAST of mRNA_H-elongata_contig116267.1281.1 vs. uniprot
Match: A0A448Z4Q0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4Q0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.020e-5
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0
Query:    2 GQLQETLERVRREADMREDEANKRXXXXRRRWKDAVARAEALQAEAHESTAPLLRQV 58
            G L++ +  + REA +RED         R+RW+DAV RA+AL  +   STAPLLRQ+
Sbjct:  902 GDLEQKIRTIEREAGVREDALRHEVSEIRKRWQDAVRRADALSMDIQSSTAPLLRQL 958          
BLAST of mRNA_H-elongata_contig116267.1281.1 vs. uniprot
Match: A0A7S4AGN4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGN4_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 9.570e-5
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0
Query:    2 GQLQETLERVRREADMREDEANKRXXXXRRRWKDAVARAEALQAEAHESTAPLLRQV 58
            G L++ L    REA +RED         R+RW+DAV RA+AL  +   STAPLLRQ+
Sbjct:  553 GDLEQKLRTTEREAGVREDALRHEVSEIRKRWQDAVRRADALSMDIQSSTAPLLRQL 609          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116267.1281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G6G4_ECTSI8.930e-1882.76TMF_TATA_bd domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K2Z4_9PHAE1.930e-1379.31TMF_TATA_bd domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZC05_9STRA3.480e-548.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A448Z4Q0_9STRA7.020e-545.61Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4AGN4_9STRA9.570e-547.37Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..28

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116267contigH-elongata_contig116267:951..1939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116267.1281.1mRNA_H-elongata_contig116267.1281.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116267 951..1939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116267.1281.1 ID=prot_H-elongata_contig116267.1281.1|Name=mRNA_H-elongata_contig116267.1281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
QGQLQETLERVRREADMREDEANKRQEDVRRRWKDAVARAEALQAEAHES
TAPLLRQV
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