prot_H-elongata_contig116211.1278.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116211.1278.1
Unique Nameprot_H-elongata_contig116211.1278.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length197
Homology
BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: D8LNC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC3_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 2.140e-75
Identity = 126/197 (63.96%), Postives = 142/197 (72.08%), Query Frame = 0
Query:    1 CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDGNADAMQALQDGWRCLLLMTDVEDDDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNS-SVYHRAMGLSVPAAFFLLCTYEPHVWLRDSVNVFTVAGLIVIMIGIKIYNTPDEPPEDRRATFQPPTAPPVKNGG 196
            CLPAAVSTVYK + LE     +D HQLSL VTAFEVVFI L  P AY+LQFLG+H DGN    QAL+DGWRCL+LM DV D D  PVDAECW GLPLV  YVV+TLLVN LV KV D + S SVYHRAM  SVP AF  LC Y    WL DS NVFTV+GLIVIMIG+++Y++  EP ED R +F PP+ P  K  G
Sbjct:  180 CLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQFLGRHGDGNTHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWAGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVALCFYNEAEWLHDSFNVFTVSGLIVIMIGLRLYHSVPEP-EDPRDSFDPPSPPDGKRYG 375          
BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: A0A6H5KEW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEW3_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 3.380e-54
Identity = 95/144 (65.97%), Postives = 105/144 (72.92%), Query Frame = 0
Query:    1 CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDGNADAMQALQDGWRCLLLMTDVEDDDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNS-SVYHRAMGLSVPAAFFLLCTYE 143
            CLPAAVSTVYK + LE     +D HQLSL VTAFEVVFI L  P AY+LQ LG+H DGN    QAL+DGWRCL+LM DV D D  PVDA+CW GLPLV  YVV+TLLVN LV KV D + S SVYHRAM  SVP AF +LC Y 
Sbjct:  213 CLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQSLGRHGDGNTHVGQALKDGWRCLVLMRDVVDIDGYPVDADCWAGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYN 356          
BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: A0A7S1YNP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YNP3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.090e-13
Identity = 53/183 (28.96%), Postives = 87/183 (47.54%), Query Frame = 0
Query:    2 LPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDGNAD-----AMQALQDGWRCLLLMTDVEDDDRN-PVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLL-------CTYEPHVWLRDSVNVFTVAGLIVIMIGIKIYN 171
            +PAA+S +YK  T+      ID ++L+L ++ F+++F  +V+P+AY LQ +G      A        Q   DG+ C L + D +      P DA C     LVI++V+S LLV     K+A  +       +MG+ V   F  +       C Y P       V+ F +    V+++G  +Y+
Sbjct:   86 IPAAISQLYKERTMIRLKQPIDRNKLNLVLSIFQLLFAVVVSPLAYGLQGMGAGSGWTAQYPSTQISQNFSDGFYCFLGILDTDTQATGYPEDARCEYAWELVIMHVISILLVGVACDKLAAATKIMYRGVSMGIMVAVIFMFIYQIRDKWCEYGP------IVSFFHLTSTAVLIVGADVYH 262          
BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: A0A7S4ML51_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ML51_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-11
Identity = 47/180 (26.11%), Postives = 89/180 (49.44%), Query Frame = 0
Query:    1 CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDG-----NADAMQALQDGWRCLL-LMTDVEDDDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLLCTYE---PHVWLRDSVNVFTVAGLIVIMIGIKIYN 171
            C+PAAVS +YK HTL      +D++QL+  ++AF+ +F  +V+P+ Y LQ +G   D      ++       DG RC   ++ D    D  P  A C     +V+++V+S ++V   V K+     +   HR + + +  A   +  YE     +      + +  A  I++++G ++++
Sbjct:  101 CIPAAVSQLYKEHTLAHFRQPVDSNQLNFLLSAFQFMFAAVVSPLVYALQGIGFRGDWLSVYPSSRISANFYDGARCFGGMLDDGRAADGYPEPAYCQCLWWIVLMHVLSIMVVGFAVDKIVHAGAAKFMHRGISIGIVLAVIAMYVYEITDDKIEYGPIAHTWNFACAIILVVGSEVFH 280          
BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: A0A7S4IGI8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IGI8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.170e-11
Identity = 47/180 (26.11%), Postives = 89/180 (49.44%), Query Frame = 0
Query:    1 CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDG-----NADAMQALQDGWRCLL-LMTDVEDDDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLLCTYE---PHVWLRDSVNVFTVAGLIVIMIGIKIYN 171
            C+PAAVS +YK HTL      +D++QL+  ++AF+ +F  +V+P+ Y LQ +G   D      ++       DG RC   ++ D    D  P  A C     +V+++V+S ++V   V K+     +   HR + + +  A   +  YE     +      + +  A  I++++G ++++
Sbjct:  499 CIPAAVSQLYKEHTLAHFRQPVDSNQLNFLLSAFQFMFAAVVSPLVYALQGIGFRGDWLSVYPSSRISANFYDGARCFGGMLDDGRAADGYPEPAYCQCLWWIVLMHVLSIMVVGFAVDKIVHAGAAKFMHRGISIGIVLAVIAMYVYEITDDKIEYGPIAHTWNFACAIILVVGSEVFH 678          
BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: K0R956_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R956_THAOC)

HSP 1 Score: 58.9 bits (141), Expect = 8.190e-7
Identity = 45/179 (25.14%), Postives = 84/179 (46.93%), Query Frame = 0
Query:    2 LPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGK-----HLDGNADAMQALQDGWRCLLLMTDVED-DDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLLCTYE-PHVWLRDS--VNVFTVAGLIVIMIGIKIYN 171
            +PAAVS +YK HTL      +D   L+L ++ F+++F  +V+P+AY LQ +G       L  +         G RC   + D     +  P  A C   L LV  + +S ++V     K+A  + + V +R +   +  +   +  Y+    W      V++F +    ++++G ++Y+
Sbjct:  277 IPAAVSQLYKEHTLTQLRQPVDRDTLNLVLSIFQLLFAIIVSPLAYGLQGMGAGDNWTSLYPSKSIGDNFHHGLRCFAGILDESTMKEGYPEPATCRWSLLLVFGHALSIVMVGISCDKLA--AATKVMYRGVSFGIICSVIFMFVYQISDKWCEYGPLVSLFHLTSTALLIVGAEVYH 453          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LNC3_ECTSI2.140e-7563.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEW3_9PHAE3.380e-5465.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1YNP3_9STRA5.090e-1328.96Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4ML51_9STRA1.020e-1126.11Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4IGI8_9STRA2.170e-1126.11Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0R956_THAOC8.190e-725.14Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013936Chloroquine-resistance transporter-likePFAMPF08627CRT-likecoord: 1..170
e-value: 1.3E-14
score: 53.9
NoneNo IPR availablePANTHERPTHR31326FAMILY NOT NAMEDcoord: 2..175
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 112..122
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 123..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 171..196
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 141..151
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..170
NoneNo IPR availableTMHMMTMhelixcoord: 92..111
NoneNo IPR availableTMHMMTMhelixcoord: 152..171
NoneNo IPR availableTMHMMTMhelixcoord: 27..49
NoneNo IPR availableTMHMMTMhelixcoord: 123..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116211contigH-elongata_contig116211:43..1897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116211.1278.1mRNA_H-elongata_contig116211.1278.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116211 43..1897 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116211.1278.1 ID=prot_H-elongata_contig116211.1278.1|Name=mRNA_H-elongata_contig116211.1278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQ
FLGKHLDGNADAMQALQDGWRCLLLMTDVEDDDRNPVDAECWGGLPLVIL
YVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLLCTYEPHVWLRD
SVNVFTVAGLIVIMIGIKIYNTPDEPPEDRRATFQPPTAPPVKNGG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013936CRT-like