prot_H-elongata_contig116007.1259.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116007.1259.1
Unique Nameprot_H-elongata_contig116007.1259.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
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BLAST of mRNA_H-elongata_contig116007.1259.1 vs. uniprot
Match: A0A6H5K5R7_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.710e-12
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 0 
Query:    1 YTAAISARREDEGVAKSNRAAAYLKVGKHREALQDASAAVKLQPSEIALYRKG 53
            Y  AIS   E E +A+SNRAA YLK+GKH EALQDASAAVKL P+E+A YRKG
Sbjct:   27 YGEAISLGGEGEALARSNRAAVYLKLGKHTEALQDASAAVKLMPTEMAFYRKG 79
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BLAST of mRNA_H-elongata_contig116007.1259.1 vs. uniprot
Match: D8LF07_ECTSI (SGT1 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF07_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.320e-11
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0 
Query:    1 YTAAISARREDEGVAKSNRAAAYLKVGKHREALQDASAAVKLQPSEIALYRKG 53
            Y  AIS   E E +A+SNRAA YLK+ KH EALQDASAAVKL P+E+A YRKG
Sbjct:   27 YGEAISLGGEGEALARSNRAAVYLKLSKHTEALQDASAAVKLMPTEMAFYRKG 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116007.1259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5R7_9PHAE1.710e-1269.81CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LF07_ECTSI2.320e-1167.92SGT1 homologue n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..54
e-value: 7.6E-11
score: 44.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 1..50
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..46
score: 10.305
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 13..46
score: 8.408

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116007contigH-elongata_contig116007:1871..2032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116007.1259.1mRNA_H-elongata_contig116007.1259.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116007 1871..2032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116007.1259.1 ID=prot_H-elongata_contig116007.1259.1|Name=mRNA_H-elongata_contig116007.1259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
YTAAISARREDEGVAKSNRAAAYLKVGKHREALQDASAAVKLQPSEIALY
RKGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom
IPR019734TPR_repeat