prot_H-elongata_contig115755.1247.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig115755.1247.1
Unique Nameprot_H-elongata_contig115755.1247.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: A0A6H5L901_9PHAE (LsmAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L901_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 6.760e-30
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0
Query:    3 VDTSWVSGGEDLSLR----GGTGKWDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREERNM 84
            VDTSWV    ++S+     GG GKWDQFAANE+LFNV STFDENLYTTPLD  SLSR Q+A AERMAAEI G +S+NIHMREERNM
Sbjct:  228 VDTSWVESSSNMSIPQSGGGGAGKWDQFAANEKLFNVTSTFDENLYTTPLDTGSLSRAQMAHAERMAAEIEGKTSSNIHMREERNM 313          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: D7FVW6_ECTSI (LsmAD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW6_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.460e-27
Identity = 62/95 (65.26%), Postives = 68/95 (71.58%), Query Frame = 0
Query:    3 VDTSWVSGGEDLSLR----GGTGKWDQFAANER---------LFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREERNM 84
            VDTSWV    ++S+     GG GKWDQFAANE+         LFNV STFDENLYTTPLD  SLSR Q+A AERMAAEI G +S NIHMREERNM
Sbjct:  221 VDTSWVESSSNMSIPQSGGGGAGKWDQFAANEKCGEVSAMCGLFNVTSTFDENLYTTPLDTGSLSRAQMAHAERMAAEIEGKTSGNIHMREERNM 315          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: A0A7S1TU51_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU51_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.030e-22
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 0
Query:    3 VDTSWVSGGEDLSLRGGTGKWDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREER 82
            VD SWV+G  D ++ G  GKWDQF ANERL+ VK+TFDENLYTT LDK   +  Q+ +AER+A EI G  S+N+HM EER
Sbjct:  163 VDASWVTGEVDGNMAGRAGKWDQFEANERLYGVKNTFDENLYTTRLDKGKFTETQMREAERLAREIEGKKSSNVHMAEER 242          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: A0A7S3Y065_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y065_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 5.250e-19
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0
Query:   18 GGTGK----WDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREER 82
            GG G+    WDQF ANERLFNV+STFDENLYTT LD+ +L+  Q+A AER+A EI G  + N+H+ EER
Sbjct:    5 GGPGRGPQPWDQFEANERLFNVRSTFDENLYTTALDRGALTAAQLAAAERLAREIEGKKATNLHLAEER 73          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: B5YMG3_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMG3_THAPS)

HSP 1 Score: 87.8 bits (216), Expect = 2.190e-18
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 0
Query:    6 SWVSGGEDLS------LRGGTGKWDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREERN 83
            SW SG   L       L G  G WDQF+ANE  FNVK+TFDENLYTT LD SS+   ++A+AER+A EI   +S+NIH+ EERN
Sbjct:  325 SWRSGQTPLGGSKVGGLEGSIGNWDQFSANEEKFNVKATFDENLYTTQLDLSSMDSAKLAEAERIAKEIESTASSNIHIAEERN 408          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: A0A7S4K4Y7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K4Y7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.450e-18
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 0
Query:   15 SLRGGTGKWDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREER 82
            +L+G  G WDQF+ANE+LFNVK+ FDE++YTT LDKS+L  +++ +AER+A EI G  S+N+H+ EER
Sbjct:   83 ALKGSIGGWDQFSANEQLFNVKAQFDESVYTTDLDKSALDHRKVREAERLAKEIEGQVSSNLHIAEER 150          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: A0A7R9UGP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGP2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.000e-18
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    3 VDTSWVSGGEDLSLRGGTGKWDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREER 82
            VD SW+    +  L G  G WDQF  NERL+ V++T+DENLYTT L+K+ L+ +Q+ +A+R+A +I G +S+N H+ EER
Sbjct:  163 VDPSWIGANVEGGLSGKAGDWDQFEVNERLYGVQNTYDENLYTTALNKADLTPEQLTEADRIARQIEGKTSSNPHIAEER 242          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: A0A6S8VWH1_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8VWH1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.580e-18
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0
Query:   11 GEDLSLRGGTGKWDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREER 82
            G+D S+RG  G+WDQF ANE  F VK++FDE+LYTT LDK+S+ RKQ  +A RMA EI G ++ N+H+ EER
Sbjct:  230 GKDDSMRGNIGEWDQFKANEAQFGVKASFDESLYTTSLDKNSVDRKQKLEAARMAREIEGQATTNMHLAEER 301          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: A0A7S1CSV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CSV7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.180e-17
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 0
Query:    5 TSWVSGGEDLSLR--GGTGKWDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREER 82
            T WVSG  D S+   G  G WDQF AN R F VK+TFDE+ YTT +D   +S  Q A AER+A EI G  S+N+H+ EER
Sbjct:  129 TDWVSGPTDASMEMTGSRGNWDQFEANRRQFGVKTTFDEHEYTTRIDHGRISGAQRARAERLAREIEGKKSSNVHVAEER 208          
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Match: A0A7S2W3D3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W3D3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.960e-17
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 0
Query:   16 LRGGTGKWDQFAANERLFNVKSTFDENLYTTPLDKSSLSRKQIADAERMAAEIAGNSSNNIHMREER 82
            L G  G+W+QF+ANE+L   K+TFDEN+YTT LDKS +  ++I +AER+A EI G SS+NIH+ EER
Sbjct:  191 LTGSIGEWNQFSANEKLTQKKATFDENIYTTELDKSKMDTRKIEEAERLAREIEGTSSSNIHIAEER 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115755.1247.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L901_9PHAE6.760e-3072.09LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVW6_ECTSI4.460e-2765.26LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S1TU51_9STRA1.030e-2260.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3Y065_HETAK5.250e-1960.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B5YMG3_THAPS2.190e-1855.95Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S4K4Y7_9STRA3.450e-1857.35Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7R9UGP2_9STRA5.000e-1848.75Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6S8VWH1_9STRA7.580e-1858.33Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S1CSV7_9STRA6.180e-1753.75Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2W3D3_9STRA6.960e-1758.21Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009604LsmAD domainSMARTSM01272LsmAD_2coord: 33..83
e-value: 3.3E-15
score: 66.5
IPR009604LsmAD domainPFAMPF06741LsmADcoord: 33..84
e-value: 6.7E-19
score: 68.2
NoneNo IPR availablePANTHERPTHR12854ATAXIN 2-RELATEDcoord: 10..82
NoneNo IPR availablePANTHERPTHR12854:SF7ATAXIN-2 HOMOLOGcoord: 10..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115755contigH-elongata_contig115755:472..1456 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115755.1247.1mRNA_H-elongata_contig115755.1247.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig115755 472..1456 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig115755.1247.1 ID=prot_H-elongata_contig115755.1247.1|Name=mRNA_H-elongata_contig115755.1247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
LQVDTSWVSGGEDLSLRGGTGKWDQFAANERLFNVKSTFDENLYTTPLDK
SSLSRKQIADAERMAAEIAGNSSNNIHMREERNM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009604LsmAD_domain