prot_H-elongata_contig115660.1238.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig115660.1238.1
Unique Nameprot_H-elongata_contig115660.1238.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length336
Homology
BLAST of mRNA_H-elongata_contig115660.1238.1 vs. uniprot
Match: D8LIC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC9_ECTSI)

HSP 1 Score: 408 bits (1048), Expect = 1.980e-128
Identity = 223/345 (64.64%), Postives = 246/345 (71.30%), Query Frame = 0
Query:    1 QLAERYTAVVRRPIDLTTVARRLRRGAYDHAAGRLRRDIIRIFSNCEKFNLTTSQLFVGIARDLRALFESQWAEAGLPVPGETPSCALRRRALLRSARYRLCWGAQLRGPLREAARQAVRAASMAALTAGGYGAAAVAEEFSLDVLPELAGDGEPSNEEWTLGLFAERACLALGLRATHPPPEEPENLGVGVLGALTGIVGLSGNGTCLALNNGNEKAGRDACAEWLFGPRQGDWLAAETA---------SGNTSTASAVVVKGAWLALDAALSPATVLVASHASRGTEFSSVWARPDKLVWAKQAKNVFWPAMLLWGSGTTAALREVNMCRVPPAFRGELEKQA 336
            +LAERYT  VRRPIDLTTVARR+RRG YD++AGRLRRDI RIF+NCE+FN+ + QLFVGIAR LRALFES+WAE+ LP PGE+ + + RRRA LR+ARYRLCW AQLRGP                  AGG GA  V+ EFS D+LP L+G+GE SNEEWTLGLFAERACLALGLRA  PP                      G           EKAGRDACA+WLFGPRQ  WLAAETA         S     A+A VV  AW ALD ALSPATVLVAS+A+RGT FSSVWARPDKLVWAKQAKN FWPAMLLWGSGTTAAL+EVNM RVPPAFR ELEKQA
Sbjct:   26 ELAERYTVEVRRPIDLTTVARRVRRGTYDNSAGRLRRDIARIFTNCERFNMCSGQLFVGIARHLRALFESKWAESDLPYPGESQATSHRRRAALRTARYRLCWRAQLRGPXXXXXXXXXXXXXXXXXAAGGPGANGVSREFSEDILPMLSGEGEESNEEWTLGLFAERACLALGLRANQPPXXXXXXXXXXXXXXXXXXXXXXG-----------EKAGRDACADWLFGPRQAAWLAAETAPAGEKRDPASAPPPVATAAVVSAAWRALDGALSPATVLVASNAARGTPFSSVWARPDKLVWAKQAKNTFWPAMLLWGSGTTAALKEVNMGRVPPAFREELEKQA 359          
BLAST of mRNA_H-elongata_contig115660.1238.1 vs. uniprot
Match: A0A835ZC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC34_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.690e-29
Identity = 112/336 (33.33%), Postives = 145/336 (43.15%), Query Frame = 0
Query:    1 QLAERYTAVVRRPIDLTTVARRLRRGAYDHAAGRLRRDIIRIFSNCEKFNLTTSQLFVGIARDLRALFESQWAEAGLPVPGETPSCALRRRALLRSARYRLCWGAQLRGPLREAARQAVRAASMAALTAGGYGAAAVAEEFSLDVLPELAGDGEPSNEEWTLGLFAERACLALGLRATHPPPEEPENLGVGVLGALTGIVGLSGNGTCLALNNGNEKAGRDACAEWLFGPRQGDWLAAETASGNTSTASAVVVKG-AWLALDAALSPATVLVASHASRGTEFSSVWARPDKLVWAKQAKNVFWPAMLLWGSGTTAALREVNMCRVPPAFRGELEKQ 335
            ++A  Y   VRRP+DL+TVARRLRRG+Y  A G++ RDI RIF NCE+FN+  S+L++  AR L+AL +  +AE GL + GET +    R    R+ R+   W A L  P                 TA    A                       +  T+G     A  ALGL     PP                                   A   A AEW  G                  AS+V   G AW  +  AL+  T  +A   +RGTE SS+WARP  LVWAKQAKN FWPAM+L  +     L  +N  R+P A    LE++
Sbjct: 2283 EIAIAYARAVRRPMDLSTVARRLRRGSYPDA-GKVYRDISRIFRNCERFNVD-SRLYINTARHLQALIDGLFAETGLALSGETAAETAARATASRARRFAAVWHAALLPPF----------------TARVAAAXXXXXXXXXXXXXXXXXXXXXXQDGVTVGAAVLHARAALGL-----PPXXXXXX----------------------------HAQAAAEAEWAVG------------------ASSVARDGEAWGDVVNALAQLTPELAEAVARGTEISSIWARPCALVWAKQAKNTFWPAMMLGRAAQGEQLTPINAARMPAAIFNMLEQR 2549          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115660.1238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIC9_ECTSI1.980e-12864.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC34_9STRA6.690e-2933.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 1..77
e-value: 1.6E-14
score: 55.6
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 3..74
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 4..58
e-value: 5.4E-9
score: 36.0
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 1..57
score: 12.25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115660contigH-elongata_contig115660:148..1329 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115660.1238.1mRNA_H-elongata_contig115660.1238.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig115660 148..1329 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig115660.1238.1 ID=prot_H-elongata_contig115660.1238.1|Name=mRNA_H-elongata_contig115660.1238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=336bp
QLAERYTAVVRRPIDLTTVARRLRRGAYDHAAGRLRRDIIRIFSNCEKFN
LTTSQLFVGIARDLRALFESQWAEAGLPVPGETPSCALRRRALLRSARYR
LCWGAQLRGPLREAARQAVRAASMAALTAGGYGAAAVAEEFSLDVLPELA
GDGEPSNEEWTLGLFAERACLALGLRATHPPPEEPENLGVGVLGALTGIV
GLSGNGTCLALNNGNEKAGRDACAEWLFGPRQGDWLAAETASGNTSTASA
VVVKGAWLALDAALSPATVLVASHASRGTEFSSVWARPDKLVWAKQAKNV
FWPAMLLWGSGTTAALREVNMCRVPPAFRGELEKQA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR001487Bromodomain