prot_H-elongata_contig115380.1221.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig115380.1221.1
Unique Nameprot_H-elongata_contig115380.1221.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length120
Homology
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: D7FVK1_ECTSI (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK1_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.900e-65
Identity = 106/127 (83.46%), Postives = 112/127 (88.19%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTV 117
            MKD GADITCGEMALS+ +LKGNGSEWALLRRHP EDVFGVQVAGAHPDQMTRV          DFVD+NMGCPIDLVCDKGMGAALMGR RKLRGI+AGM+SQL+CPLTVKMRVGWDEKKPNAD V
Sbjct:  374 MKDQGADITCGEMALSHHLLKGNGSEWALLRRHPSEDVFGVQVAGAHPDQMTRVAELLEKNAKMDFVDINMGCPIDLVCDKGMGAALMGRSRKLRGIIAGMSSQLTCPLTVKMRVGWDEKKPNADVV 500          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A835ZAB5_9STRA (Dus domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.180e-54
Identity = 87/127 (68.50%), Postives = 98/127 (77.17%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTV 117
            MKD GADITCGEMAL   +LKG  SEWALL+RH CEDVFGVQVAG HPDQMTRV          DFVD+NMGCPIDLVC +GMG+ALM + RK+RGI+ GMTS L  P+TVKMRVGWD+K P A  +
Sbjct:   25 MKDLGADITCGEMALGQNLLKGQASEWALLKRHACEDVFGVQVAGGHPDQMTRVAELIRNEASVDFVDINMGCPIDLVCKQGMGSALMNKQRKVRGILMGMTSILEVPVTVKMRVGWDDKTPTAHKI 151          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A1E7EIW9_9STRA (FMN-linked oxidoreductase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EIW9_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.020e-48
Identity = 79/124 (63.71%), Postives = 95/124 (76.61%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 114
            MK FGADITCGEMALS  +L+G  SEWALL+RHP ED+FGVQ+A AHPDQ TRV          DFVD+N+GCP+DL+C+KG GAALM R RKL+G + GM++ LSC +TVKMR GW+  KP A
Sbjct:   29 MKQFGADITCGEMALSTNLLEGKASEWALLKRHPSEDIFGVQLAAAHPDQFTRVSELVEKYTDVDFVDMNLGCPLDLLCNKGAGAALMMRERKLKGALEGMSNNLSCSITVKMRTGWNIHKPFA 152          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A7S2PN00_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PN00_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.300e-46
Identity = 77/124 (62.10%), Postives = 93/124 (75.00%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 114
            +K  GADITCGEMA++  +LKG GSEWALL+RHPCEDVFGVQ+A  H DQ TRV          DFVD+N+GCPIDL+CDKG G+ALM R +KL+  + G++  LSCP TVKMR GW+EK P A
Sbjct:  188 LKGLGADITCGEMAVAENLLKGQGSEWALLKRHPCEDVFGVQIAAPHADQFTRVCELIDAQCEVDFVDLNLGCPIDLICDKGAGSALMLRDKKLKASLMGISDALSCPFTVKMRTGWNEKDPIA 311          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A7S2RFF3_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFF3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.440e-46
Identity = 79/127 (62.20%), Postives = 95/127 (74.80%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTR----------VDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTV 117
            MK FGADITCGEMA++  IL G  SEWALL+RHP ED+FGVQ+A  H DQ+TR          VDFVDVNMGCPIDLVC+ G GAALM RP K++ IV G+T+ LSCP+T+KMR GW+E+ P A  +
Sbjct:  260 MKRFGADITCGEMAMAQNILSGQPSEWALLKRHPSEDIFGVQIASPHADQLTRCSELIEQFVKVDFVDVNMGCPIDLVCNVGAGAALMQRPNKVKQIVRGLTATLSCPITLKMRTGWNERHPMAHNL 386          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: B8BWN9_THAPS (Dus domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWN9_THAPS)

HSP 1 Score: 160 bits (406), Expect = 9.110e-46
Identity = 76/126 (60.32%), Postives = 95/126 (75.40%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV------------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 114
            MK FGADITCGEMA+++Q+L+G  SEWALL+RH  EDVFGVQ+A  H DQ TRV            DFVD+N+GCPIDLVC+KG GA+LM R RKL+G V G+T  L+CP+T+K+R GW+E +P A
Sbjct:   32 MKGFGADITCGEMAIADQLLQGKPSEWALLKRHSSEDVFGVQIATGHADQYTRVAELIANEPEIEVDFVDMNLGCPIDLVCEKGAGASLMLRERKLKGSVEGLTKTLNCPVTIKIRTGWNENEPIA 157          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: K0SB97_THAOC (Dus domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SB97_THAOC)

HSP 1 Score: 162 bits (409), Expect = 4.900e-45
Identity = 77/131 (58.78%), Postives = 96/131 (73.28%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTR------------VDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTVKK 119
            MK+FGADITCGEMAL++Q+L+G  SEWALL+RH  EDVFGVQ+A  HPDQ TR            VDFVD+N+GCP+DLVCDKG GA LM R  KL+G V GM + L+CP+T+KMR GW  + P A  +++
Sbjct:  340 MKNFGADITCGEMALADQLLQGRQSEWALLKRHASEDVFGVQIASGHPDQYTRICEVLANEESLDVDFVDMNLGCPLDLVCDKGAGAKLMLRDSKLKGSVKGMLNVLNCPVTIKMRTGWSSEHPIAHELQR 470          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: L8GS14_ACACA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GS14_ACACA)

HSP 1 Score: 163 bits (412), Expect = 8.700e-45
Identity = 78/123 (63.41%), Postives = 92/123 (74.80%), Query Frame = 0
Query:    2 KDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTR----------VDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 114
            K  GADITCGEMAL+  +L+G  SEWALLRRHP ED+FGVQ+ G HPD +T+          VDFVD+N GCPIDLV +KG G+AL+ RPR+L GIV GM + LSCPLTVK+R G DEK PNA
Sbjct:  330 KTLGADITCGEMALAENLLQGQPSEWALLRRHPSEDIFGVQLCGPHPDHLTKCGQVLDETISVDFVDINCGCPIDLVVNKGAGSALLDRPRRLEGIVRGMATVLSCPLTVKIRTGKDEKAPNA 452          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A812U5K9_9DINO (DUS3L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U5K9_9DINO)

HSP 1 Score: 160 bits (405), Expect = 6.620e-44
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTR----------VDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNADTV 117
            M   GAD+T  EMAL++Q+LKG   EWAL++RHPCE +FG+QVAGAHP+ M R          VDFVDVNMGCPIDLVC +GMG+ LMGR  K+RGI+  MTS +  PLT+KMR+G D+KKP A  V
Sbjct:  243 MVGLGADVTVSEMALAHQLLKGENREWALVKRHPCEKMFGLQVAGAHPEDMGRLAELVQNELTVDFVDVNMGCPIDLVCQRGMGSTLMGRQAKIRGIIKNMTSMMDAPLTLKMRIGIDDKKPIAHKV 369          
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Match: A0A448ZFI2_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFI2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.950e-43
Identity = 74/124 (59.68%), Postives = 93/124 (75.00%), Query Frame = 0
Query:    1 MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQMTRV----------DFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLTVKMRVGWDEKKPNA 114
            MK +GADITCGEMA++  +L+G  SEWALL+RHP EDVFG+Q+A AH DQ TRV          DFVD+N+GCP+DL+C+KG GAALM R  KL+G +AGM+  LSC +TVKMR GW+  +P A
Sbjct:  343 MKQYGADITCGEMAVATNLLEGKTSEWALLKRHPSEDVFGIQIAAAHADQFTRVSELIEKYTDVDFVDMNLGCPLDLLCNKGAGAALMMRENKLKGALAGMSKNLSCSITVKMRTGWNIHRPFA 466          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115380.1221.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVK1_ECTSI2.900e-6583.46tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 T... [more]
A0A835ZAB5_9STRA2.180e-5468.50Dus domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1E7EIW9_9STRA2.020e-4863.71FMN-linked oxidoreductase (Fragment) n=1 Tax=Fragi... [more]
A0A7S2PN00_9STRA1.300e-4662.10tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A7S2RFF3_9STRA1.440e-4662.20tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
B8BWN9_THAPS9.110e-4660.32Dus domain-containing protein (Fragment) n=1 Tax=T... [more]
K0SB97_THAOC4.900e-4558.78Dus domain-containing protein n=1 Tax=Thalassiosir... [more]
L8GS14_ACACA8.700e-4563.41tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A812U5K9_9DINO6.620e-4459.84DUS3L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A448ZFI2_9STRA2.950e-4359.68tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 1..119
e-value: 3.0E-32
score: 113.6
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 2..113
e-value: 2.5E-21
score: 76.1
NoneNo IPR availablePANTHERPTHR45846FAMILY NOT NAMEDcoord: 1..116
NoneNo IPR availableSUPERFAMILY51395FMN-linked oxidoreductasescoord: 1..112
IPR018517tRNA-dihydrouridine synthase, conserved sitePROSITEPS01136UPF0034coord: 57..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115380contigH-elongata_contig115380:464..2025 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115380.1221.1mRNA_H-elongata_contig115380.1221.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig115380 455..2025 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig115380.1221.1 ID=prot_H-elongata_contig115380.1221.1|Name=mRNA_H-elongata_contig115380.1221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MKDFGADITCGEMALSNQILKGNGSEWALLRRHPCEDVFGVQVAGAHPDQ
MTRVDFVDVNMGCPIDLVCDKGMGAALMGRPRKLRGIVAGMTSQLSCPLT
VKMRVGWDEKKPNADTVKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR001269tRNA_hU_synthase
IPR018517tRNA_hU_synthase_CS