prot_H-elongata_contig11492.1193.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11492.1193.1
Unique Nameprot_H-elongata_contig11492.1193.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length167
Homology
BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: D7FRK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK1_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 3.420e-84
Identity = 130/164 (79.27%), Postives = 142/164 (86.59%), Query Frame = 0
Query:    1 SADYTRHVNDPEVRAQTYEGVVARMLWASILHPFDLIATRMITESSTQYSTVASSVSHVLEHRGVTGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRMLDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSSR 164
            S  Y+RHVNDPEV AQTYEG   R+LWA ILHPFDL+ATRM+TES  +Y+T  +SV HVL+  G  GLFLGVRSSI NVLLPFG  YL+GVP LIKTRRMLDGMDTVFRAGMGGSLD+VR ILKEEG AGLFAGYRATLWGIGPAFLSLCGARLLVYV++GSSR
Sbjct:  213 SDSYSRHVNDPEVLAQTYEGFATRILWAGILHPFDLLATRMMTESRPEYATGTASVRHVLKQSGFAGLFLGVRSSILNVLLPFGNWYLLGVPFLIKTRRMLDGMDTVFRAGMGGSLDMVRAILKEEGLAGLFAGYRATLWGIGPAFLSLCGARLLVYVVLGSSR 376          
BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A7S2C0Y1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0Y1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.510e-15
Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   67 GLFLGVRSSIFNVLLPFGK--LYLMGVPSLIKTRRMLDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSSRRT 166
            GLF+GVR SI N LLP G    +++G+PSL++ RRML+   T    G+GG+++I+R ++K +G +GLFAG RA + G+ P   ++  A    +++ GS+ +T
Sbjct:   10 GLFVGVRLSILNTLLPTGSSTFFMLGIPSLLRIRRMLE--TTPAADGLGGAIEILRQVVKSDGPSGLFAGGRAVVDGLFPTAAAIWIAGTASWLVTGSTLKT 109          
BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A836CH83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH83_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.030e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0
Query:  110 AGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSS 163
            +G+GGSLD++R I+  +G  GLFAG +A+ WG  PAF +LC ARLLVY++ GSS
Sbjct:   12 SGLGGSLDLLRDIISTQGVTGLFAGLKASCWGFVPAFGALCAARLLVYMITGSS 65          
BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A836CAD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.610e-12
Identity = 50/150 (33.33%), Postives = 66/150 (44.00%), Query Frame = 0
Query:   10 DPEVRAQTYEGVVARML--------------------------WASILHPFDLIATRMITESSTQYSTVASSVSHVLEHRGV--------------TGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRMLDG-MDTVFRAGMGGSLDI 118
            DPE+    YEGV+ R +                          WA  LHPFDL+ATRMITE+  +Y+TV +++                        GLF GVRSSI    LP    Y +GVP L+KTRRM    + +    G+G  L +
Sbjct:  243 DPEMAVHAYEGVLGRAVCSDRSXXXXXXXXXXXXXXXXXXXXVWAVALHPFDLLATRMITEAGARYATVRAALRTAAGSXXXXXXXXXXXAGDGHWAGLFAGVRSSIIGACLPCSSWYALGVPFLVKTRRMASASVGSDLEPGLGFGLQV 392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRK1_ECTSI3.420e-8479.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2C0Y1_9STRA5.510e-1541.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CH83_9STRA2.030e-1257.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAD8_9STRA6.610e-1233.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023395Mitochondrial carrier domain superfamilyGENE3D1.50.40.10coord: 92..157
e-value: 7.9E-7
score: 30.0
IPR023395Mitochondrial carrier domain superfamilyGENE3D1.50.40.10coord: 3..91
e-value: 9.7E-8
score: 32.9
IPR023395Mitochondrial carrier domain superfamilySUPERFAMILY103506Mitochondrial carriercoord: 18..145
IPR018108Mitochondrial substrate/solute carrierPFAMPF00153Mito_carrcoord: 19..79
e-value: 6.7E-7
score: 29.1
coord: 94..145
e-value: 5.9E-5
score: 22.9
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 11..97
score: 11.229
NoneNo IPR availablePANTHERPTHR45667FAMILY NOT NAMEDcoord: 20..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 137..160
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 161..166
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 96..136
NoneNo IPR availableTMHMMTMhelixcoord: 69..91
NoneNo IPR availableTMHMMTMhelixcoord: 137..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11492contigH-elongata_contig11492:5992..8623 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11492.1193.1mRNA_H-elongata_contig11492.1193.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11492 5992..8623 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11492.1193.1 ID=prot_H-elongata_contig11492.1193.1|Name=mRNA_H-elongata_contig11492.1193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
SADYTRHVNDPEVRAQTYEGVVARMLWASILHPFDLIATRMITESSTQYS
TVASSVSHVLEHRGVTGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRM
LDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLC
GARLLVYVLMGSSRRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom_sf
IPR018108Mitochondrial_sb/sol_carrier