prot_H-elongata_contig113947.1109.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig113947.1109.1
Unique Nameprot_H-elongata_contig113947.1109.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length95
Homology
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Match: D8LM03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM03_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.830e-38
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 0
Query:    1 IFAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLWPLSSRLSTWTTFVMIGWGIITVLAYMSRPEWFEIPKQTSST 91
            IFAVLLF+YE VRV+  CER  QIM KNFGFFFGAKGRGLYLVF GFL +PL   LS WT  V +GWG++TVLAYM+RPEWFE+PK   +T
Sbjct:   80 IFAVLLFMYEFVRVMGNCERPKQIMTKNFGFFFGAKGRGLYLVFVGFLNFPLDLTLSFWTGVVTLGWGVLTVLAYMTRPEWFEVPKPAQNT 170          
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Match: A0A836CK83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK83_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.760e-14
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 0
Query:    2 FAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLWPLSSRLSTWTTFVMIGWGIITVLAYMSRPEWFEIPKQT 88
            FAVLLF YE++R +       ++MR+NFG+F+G  GRG YL+F GFL + L   +   T  V +GWG + +     +PEWF + K T
Sbjct:   83 FAVLLFSYEVLRWVPNAN-LDEMMRRNFGWFYGNMGRGFYLIFVGFLNFGLHGTVPLATGIVCLGWGALCIAVGFYKPEWFAVEKST 168          
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Match: A0A7S4A8Z0_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8Z0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.420e-6
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 0
Query:    1 IFAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLWPLSSR-----LSTWTTFVMIGWGIITVLAYMSRPE 80
            +FAVLLFLYEL+   +  ++ ++ MRKNFGF +G +G+GLYL+F  FL + L        L+  T    +  G++ +     RPE
Sbjct:   91 LFAVLLFLYELMWW-SPMKKLNKDMRKNFGFMYGLRGKGLYLIFVAFLCFGLGKDAKVAILNYCTGASFLAGGLLHMFVIFFRPE 174          
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Match: A0A7S2W1J8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W1J8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.080e-6
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0
Query:    2 FAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLWPLSSRLSTW----TTFVMIGWGIITVLAYMSRPEWFE 83
            F++LLF YEL+  ++     ++I+RKNFGF +G KG+GLYL+F  FL   L +    W    T    +  GI+ +     RPE  E
Sbjct:   96 FSLLLFTYELMWWIS-VPTINRIVRKNFGFMYGFKGKGLYLIFVAFLCVGLDNGGEEWLRYFTGVAFLSGGILHLFLVCFRPEIVE 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113947.1109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM03_ECTSI2.830e-3870.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CK83_9STRA1.760e-1442.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A8Z0_9STRA3.420e-638.82Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S2W1J8_9STRA6.080e-638.37Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38894FAMILY NOT NAMEDcoord: 1..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..94
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..76
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..55
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 29..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113947contigH-elongata_contig113947:1361..2029 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113947.1109.1mRNA_H-elongata_contig113947.1109.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig113947 1361..2029 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig113947.1109.1 ID=prot_H-elongata_contig113947.1109.1|Name=mRNA_H-elongata_contig113947.1109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
IFAVLLFLYELVRVLTRCERAHQIMRKNFGFFFGAKGRGLYLVFAGFLLW
PLSSRLSTWTTFVMIGWGIITVLAYMSRPEWFEIPKQTSSTGES*
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